- using R version 2.9.1 (2009-06-26)
- using session charset: UTF-8
- checking for file 'assist/DESCRIPTION' ... OK
- this is package 'assist' version '2.0'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'assist' can be installed ... WARNING
Found the following significant warnings:
Warning: unmatched right brace in file 'Shrinkage.rd' on line 6
Warning: unmatched right brace in file 'hat.ssr.rd' on line 5
Warning: unmatched right brace in file 'intervals.nnr.rd' on line 59
Warning: invalid whitespace before brace in file 'kron.rd' at '\item{x} {a vector or a list of numerical values which spans the one-dimensional space.}'
Warning: invalid whitespace before brace in file 'kron.rd' at ' \item{y} {a vector/list ofnumerical values. Default is x.}'
Warning: invalid whitespace before brace in file 'nnr.control.rd' at ' \item{increment} {specifies a small value as increment to calcuate derivatives. Default is 1e-04.}'
See http://www.r-project.org/nosvn/R.check/r-release-linux-ix86/assist-00install.html for details.
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
GPL version 2 or later
Standardizable: TRUE
Standardized license specification:
GPL (>= 2)
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
hat.ssr: possible error in gdsidr(s = swk, q = qSum, y = y, family =
ssr.obj$expand.call$family, vmu = ssr.obj$expand.call$spar, tol1 =
ssr.obj$expand.call$control$tol, tol2 =
ssr.obj$expand.call$control$tol.g, maxite =
ssr.obj$expand.call$control$maxit.g, job =
ssr.obj$expand.call$control$job, limnla = ssr.obj$expand.call$limnla,
prec = ssr.obj$expand.call$control$prec): unused argument(s) (maxite
= ssr.obj$expand.call$control$maxit.g)
plot.bCI: no visible global function definition for ‘xyplot’
slm: no visible binding for global variable ‘response’
snm: no visible global function definition for ‘matDiag’
ssr: no visible binding for global variable ‘response’
table2: no visible global function definition for ‘is.category’
table2: no visible global function definition for ‘which.na’
xyplot2: no visible global function definition for ‘xyplot’
xyplot2 : <anonymous>: no visible global function definition for
‘strip.default’
xyplot2 : <anonymous>: no visible global function definition for
‘panel.xyplot’
xyplot2 : <anonymous>: no visible global function definition for
‘panel.superpose’
- checking Rd files ... OK
- checking Rd files against version 2 parser ... WARNING
*** error on file ./man/Shrinkage.rd
Error in parse_Rd("./man/Shrinkage.rd", encoding = "unknown") :
./man/Shrinkage.rd:6:1: unexpected '}'
5: \description{Return a matrix evaluating reproducing kernels for the discrete shrinkage towards zero or the mean estimate}
6: }
^
*** error on file ./man/gdmudr.rd
Error : ./man/gdmudr.rd:81: Unrecognized macro \itme
*** error on file ./man/hat.ssr.rd
Error in parse_Rd("./man/hat.ssr.rd", encoding = "unknown") :
./man/hat.ssr.rd:5:1: unexpected '}'
4: Extract the Hat Matrix from a ssr Object}
5: }
^
*** error on file ./man/intervals.nnr.rd
Error in parse_Rd("./man/intervals.nnr.rd", encoding = "unknown") :
./man/intervals.nnr.rd:59:1: unexpected '}'
58: \code{\link{nnr}}, \code{\link{plot.bCI}}}
59: }
^
Warning in parse_Rd("./man/kron.rd", encoding = "unknown") :
bad markup (extra space?) at kron.rd:8:12
Warning in parse_Rd("./man/kron.rd", encoding = "unknown") :
bad markup (extra space?) at kron.rd:9:12
Warning: ./man/kron.rd:8: Unnecessary braces at ‘{a vector or a list of numerical values which spans the one-dimensional space.}’
Warning: ./man/kron.rd:9: Unnecessary braces at ‘{a vector/list ofnumerical values. Default is x.}’
Warning in parse_Rd("./man/nnr.control.rd", encoding = "unknown") :
bad markup (extra space?) at nnr.control.rd:45:17
Warning: ./man/nnr.control.rd:45: Unnecessary braces at ‘{specifies a small value as increment to calcuate derivatives. Default is 1e-04.}’
*** error on file ./man/print.ssr.rd
Error : ./man/print.ssr.rd:1-3: \name must only contain simple text.
problems found in ‘Shrinkage.rd’, ‘gdmudr.rd’, ‘hat.ssr.rd’, ‘intervals.nnr.rd’, ‘print.ssr.rd’
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'anova.ssr':
anova.ssr
S3 methods shown with full name in documentation object 'deviance.ssr':
deviance.ssr
S3 methods shown with full name in documentation object 'intervals.nnr':
intervals.nnr
S3 methods shown with full name in documentation object 'intervals.slm':
intervals.slm
S3 methods shown with full name in documentation object 'intervals.snm':
intervals.snm
S3 methods shown with full name in documentation object 'intervals.snr':
intervals.snr
S3 methods shown with full name in documentation object 'plot.bCI':
plot.bCI
S3 methods shown with full name in documentation object 'plot.ssr':
plot.ssr
S3 methods shown with full name in documentation object 'predict.slm':
predict.slm
S3 methods shown with full name in documentation object 'predict.snm':
predict.snm
S3 methods shown with full name in documentation object 'predict.snr':
predict.snr
S3 methods shown with full name in documentation object 'predict.ssr':
predict.ssr
S3 methods shown with full name in documentation object ' print.anova.ssr':
print.anova.ssr
S3 methods shown with full name in documentation object 'print.nnr':
print.nnr
S3 methods shown with full name in documentation object 'print.slm':
print.slm
S3 methods shown with full name in documentation object 'print.snm':
print.snm
S3 methods shown with full name in documentation object 'print.snr':
print.snr
S3 methods shown with full name in documentation object ' print.ssr ':
print.ssr
S3 methods shown with full name in documentation object 'print.summary.nnr':
print.summary.nnr
S3 methods shown with full name in documentation object 'print.summary.slm':
print.summary.slm
S3 methods shown with full name in documentation object 'print.summary.snm':
print.summary.snm
S3 methods shown with full name in documentation object 'print.summary.snr':
print.summary.snr
S3 methods shown with full name in documentation object 'print.summary.ssr':
print.summary.ssr
S3 methods shown with full name in documentation object 'summary.nnr':
summary.nnr
S3 methods shown with full name in documentation object 'summary.slm':
summary.slm
S3 methods shown with full name in documentation object 'summary.snm':
summary.snm
S3 methods shown with full name in documentation object 'summary.snr':
summary.snr
S3 methods shown with full name in documentation object 'summary.ssr':
summary.ssr
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... OK
- checking PDF version of manual ... OK