• using R version 3.0.1 (2013-05-16)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘analogue/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘analogue’ version ‘0.10-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘analogue’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [17s/17s] OK
• checking differences from ‘analogue-Ex.Rout’ to ‘analogue-Ex.Rout.save’ ...
  2c2
  < This is vegan 2.0-7
  ---
  > This is vegan 2.0-5
  6c6
  < > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
  ---
  > > assign(".oldSearch", search(), pos = 'CheckExEnv')
  5021c5021
  < 2.019e+00 9.173e-01 2.934e-15 -3.815e+00
  ---
  > 2.019e+00 9.173e-01 2.228e-14 -3.815e+00
  5879c5879
  < Iteration 5: d.sq: 4366.4974
  ---
  > Iteration 5: d.sq: 4366.4975
  5979c5979
  < Iteration 1: d.sq: 4853.7911
  ---
  > Iteration 1: d.sq: 4853.7912
  5998c5998
  < Iteration 5: d.sq: 4366.4974
  ---
  > Iteration 5: d.sq: 4366.4975
  OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [18s/18s] OK
• checking re-building of vignette PDFs ... [25s/26s] OK
• checking PDF version of manual ... OK