• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘VLMC/DESCRIPTION’ ... OK
• this is package ‘VLMC’ version ‘1.3-12’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘VLMC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  predict.vlmc: warning in abbreviate(nABC, min = 1): partial argument
  match of 'min' to 'minlength'
  prt.vvec: warning in formatC(v[i], w = 1): partial argument match of
  'w' to 'width'
  vlmc: warning in abbreviate(alphabet, min = 1): partial argument match
  of 'min' to 'minlength'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'as.dendrogram.vlmc':
  ‘as.dendrogram.vlmc’
  
  S3 methods shown with full name in documentation object 'deviance.vlmc':
  ‘deviance.vlmc’
  
  S3 methods shown with full name in documentation object 'draw.vlmc':
  ‘draw.vlmc’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File ‘/home/hornik/tmp/R.check/r-release/Work/build/Packages/VLMC/libs/VLMC.so’:
  Found ‘stdout’, possibly from ‘stdout’ (C)
  Object: ‘fitvlmc.o’
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... [6s/6s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [13s/13s] OK
  Running ‘AIC-etc.R’ [1s/1s]
  Comparing ‘AIC-etc.Rout’ to ‘AIC-etc.Rout.save’ ... OK
  Running ‘iid-cutoff.R’ [11s/11s]
  Comparing ‘iid-cutoff.Rout’ to ‘iid-cutoff.Rout.save’ ... OK
  Running ‘pred-vlmc.R’ [0s/0s]
  Comparing ‘pred-vlmc.Rout’ to ‘pred-vlmc.Rout.save’ ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/VLMC.Rcheck/00check.log’
  for details.