• using R version 2.14.1 (2011-12-22)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• using option ‘--no-vignettes’
• checking for file ‘RobLoxBioC/DESCRIPTION’ ... OK
• this is package ‘RobLoxBioC’ version ‘0.8.2’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘RobLoxBioC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking examples ... OK
• checking differences from ‘RobLoxBioC-Ex.Rout’ to ‘RobLoxBioC-Ex.Rout.save’ ...
  25c25
  < :startupmsg> Utilities for start-up messages (version 0.7.2)
  ---
  > :startupmsg> Utilities for start-up messages (version 0.7.3)
  32c32
  < :SweaveListingUtils> 0.5.5)
  ---
  > :SweaveListingUtils> 0.5.4)
  58c58
  < :distr> 2.3.3)
  ---
  > :distr> 2.3.4)
  97c97
  < :distrEx> Extensions of package distr (version 2.3.1)
  ---
  > :distrEx> Extensions of package distr (version 2.3.2)
  125c125
  < :distrMod> (version 2.3.1)
  ---
  > :distrMod> (version 2.3.3)
  231,232c231,232
  < [1] 0.1642185 0.1567706 0.1571387 0.1609188 0.1617499 0.1607157 0.1382646
  < [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1728984 0.1519412
  ---
  > [1] 0.1755693 0.1567648 0.1571403 0.1609188 0.1617499 0.1607157 0.1382646
  > [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1729001 0.1519412
  353c353
  < 3.928 2.400 6.330
  ---
  > 5.597 0.044 5.660
  363c363
  < > concentrations <- as.numeric(colnames(SpikeIn))
  ---
  > > concentrations <- as.numeric(sampleNames(SpikeIn))
  OK
• checking PDF version of manual ... OK