• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘NeatMap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NeatMap’ version ‘0.3.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘NeatMap’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  CircularDendrogram: no visible binding for global variable ‘group’
  CircularDendrogram: no visible binding for global variable ‘x’
  CircularDendrogram: no visible binding for global variable ‘y’
  DynamicLabels: no visible binding for '<<-' assignment to ‘starty’
  DynamicLabels: no visible binding for '<<-' assignment to ‘id’
  DynamicLabels : begin: no visible binding for '<<-' assignment to
  ‘width’
  DynamicLabels : begin: no visible binding for '<<-' assignment to
  ‘height’
  DynamicLabels : begin: no visible binding for '<<-' assignment to
  ‘starty’
  DynamicLabels : update: no visible binding for '<<-' assignment to
  ‘lambda’
  DynamicLabels : update: no visible binding for global variable ‘starty’
  DynamicLabels : update: no visible binding for global variable ‘height’
  DynamicLabels : update: no visible binding for global variable ‘lambda’
  DynamicLabels : update: no visible binding for global variable ‘id’
  DynamicLabels : update: no visible binding for '<<-' assignment to ‘id’
  DynamicLabels : update: warning in text3d(positions, text = labels, cex
  = mysize, adj = 0): partial argument match of 'text' to 'texts'
  DynamicLabels : update: warning in text3d(positions, text = labels, cex
  = mysize, color = colors, adj = 0): partial argument match of 'text'
  to 'texts'
  circularmap: no visible binding for global variable ‘label’
  draw.dendrogram: no visible binding for global variable ‘x’
  draw.dendrogram: no visible binding for global variable ‘y’
  draw.dendrogram: no visible binding for global variable ‘group’
  draw.dendrogram3d: warning in text3d(positions, text = labels, cex =
  label.size): partial argument match of 'text' to 'texts'
  draw.dendrogram3d: warning in text3d(positions, text = labels, color =
  label.colors, cex = label.size): partial argument match of 'text' to
  'texts'
  draw.labels: no visible binding for global variable ‘x’
  draw.labels: no visible binding for global variable ‘y’
  heatmap1: no visible binding for global variable ‘x’
  heatmap1: no visible binding for global variable ‘y’
  heatmap1: no visible binding for global variable ‘values’
  profileplot3d: warning in text3d(textpos, text = labels, cex =
  label.size, adj = 0): partial argument match of 'text' to 'texts'
  profileplot3d: warning in text3d(textpos, text = labels, color =
  label.colors, cex = label.size, adj = 0): partial argument match of
  'text' to 'texts'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘NeatMap-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: NeatMap-package
  > ### Title: Non-clustered Heatmaps
  > ### Aliases: NeatMap-package NeatMap
  > ### Keywords: package
  >
  > ### ** Examples
  >
  >
  > #heatmap1 using pca (the scale_x_continuous ensures that labels can be seen)
  > make.heatmap1(mtcars,row.method="PCA",column.method="average.linkage",
  + row.labels=rownames(mtcars),column.labels=colnames(mtcars))+
  + scale_x_continuous(lim=c(-1,15))
  > #circularmap using nMDS and pearson correlation
  > make.circularmap(as.matrix(mtcars),metric="euclidean",cluster.method="complete.linkage",
  + normalize.profiles=FALSE,label.names=rownames(mtcars),label.size=3)
  >
  > #lineplot using pca
  > mtcars.PCA<-prcomp(mtcars);
  > lineplot(mtcars.PCA$x,mtcars);
  >
  > #profileplot3d and stereo.profileplot3d using PCA
  > make.profileplot3d(mtcars,row.method="PCA",column.method="average.linkage")
  Error in rgl.cur() : rgl_dev_getcurrent
  Calls: make.profileplot3d ... draw.dendrogram3d -> segments3d -> .check3d -> rgl.cur
  Execution halted