• using R version 3.0.0 (2013-04-03)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘MASS/DESCRIPTION’ ... OK
  • this is package ‘MASS’ version ‘7.3-26’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘MASS’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking examples ... [13s/13s] OK
  • checking differences from ‘MASS-Ex.Rout’ to ‘MASS-Ex.Rout.save’ ...
    872c872
    < -2.42080775 -0.61510519 -0.03573836 0.81641138 2.15153495
    ---
    > -2.42080780 -0.61510520 -0.03573836 0.81641138 2.15153499
    1530c1530
    < factor(subject)2 -3.021e-15 2.828e-01 0.000 1.000000
    ---
    > factor(subject)2 -2.300e-15 2.828e-01 0.000 1.000000
    2383c2383
    < ContHigh -2.159e-16 1.690e-01 0.000 1.000000
    ---
    > ContHigh -1.490e-15 1.690e-01 0.000 1.000000
    3232c3232
    < -3.631e+01 7.292e-01 4.167e-01 6.030e-18
    ---
    > -3.631e+01 7.292e-01 4.167e-01 -8.131e-17
    3396c3396
    < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433
    ---
    > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434
    3398c3398
    < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395
    ---
    > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396
    3400c3400
    < 3.81438456 3.73878664 3.51332580 3.39741114 3.47088607
    ---
    > 3.81438456 3.73878664 3.51332581 3.39741115 3.47088608
    3402c3402
    < 3.72895847 3.31863862 3.37938672 2.96452195 3.58468686
    ---
    > 3.72895847 3.31863862 3.37938673 2.96452195 3.58468686
    3404c3404
    < 3.39628029 3.36998871 -2.96015461
    ---
    > 3.39628029 3.36998872 -2.96015460
    3427c3427
    < Achieved convergence tolerance: 4.889e-06
    ---
    > Achieved convergence tolerance: 4.923e-06
    3567c3567
    < (Intercept) 2.7870650 (Intr)
    ---
    > (Intercept) 2.7870651 (Intr)
    3569c3569
    < Residual 6.2483880
    ---
    > Residual 6.2483879
    3589c3589
    < -4.05938661 -0.63108408 0.06551865 0.71786439 2.79454034
    ---
    > -4.05938661 -0.63108408 0.06551865 0.71786438 2.79454034
    3636c3636
    < N:K 1 33.1 33.13 2.146 0.16865
    ---
    > N:K 1 33.1 33.14 2.146 0.16865
    3695c3695
    < 54.02 57.45 60.77 50.12 50.52 56.35
    ---
    > 54.03 57.45 60.77 50.12 50.52 56.35
    3743c3743
    < Nf 3 20020 6674 37.686 2.46e-12 ***
    ---
    > Nf 3 20020 6673 37.686 2.46e-12 ***
    3761c3761
    < Nf 3 20020 6674 37.686 2.46e-12 ***
    ---
    > Nf 3 20020 6673 37.686 2.46e-12 ***
    3795c3795
    < 104.50 109.79 97.62
    ---
    > 104.50 109.79 97.63
    5182c5182
    < Achieved convergence tolerance: 4.354e-06
    ---
    > Achieved convergence tolerance: 4.324e-06
    OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [7s/7s] OK
    Running ‘confint.R’ [0s/0s]
    Running ‘fitdistr.R’ [0s/0s]
    Comparing ‘fitdistr.Rout’ to ‘fitdistr.Rout.save’ ... OK
    Running ‘glm.nb.R’ [1s/1s]
    Running ‘hubers.R’ [0s/0s]
    Running ‘lme.R’ [1s/1s]
    Running ‘polr.R’ [1s/1s]
    Running ‘profile.R’ [0s/0s]
    Running ‘regression.R’ [2s/2s]
    Comparing ‘regression.Rout’ to ‘regression.Rout.save’ ... OK
    Running ‘rlm.R’ [1s/1s]
    Running ‘scripts.R’ [0s/0s]
  • checking PDF version of manual ... OK