• using R version 2.7.1 (2008-06-23)
  • using session charset: UTF-8
  • checking for file 'Geneland/DESCRIPTION' ... OK
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  • this is package 'Geneland' version '2.0.12'
  • checking package dependencies ... OK
    •
  • checking if this is a source package ... OK
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  • checking whether package 'Geneland' can be installed ... WARNING
    Found the following significant warnings:
    Warning: Deleted feature: End expression in DO loop at (1) must be integer
    See http://www.r-project.org/nosvn/R.check/r-release-linux-ix86/Geneland-00install.html for details.
  • checking package directory ... OK
    •
  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
    •
  • checking DESCRIPTION meta-information ... OK
    •
  • checking top-level files ... OK
    •
  • checking index information ... OK
    •
  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
    •
  • checking for unstated dependencies in R code ... OK
    •
  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
    assignment to ‘probs’
    Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
    assignment to ‘pops’
    Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
    global variable ‘probs’
    Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
    global variable ‘pops’
    Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
    '<<-' assignment to ‘probs’
    Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
    '<<-' assignment to ‘pops’
    Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
    global variable ‘pops’
    Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
    global variable ‘probs’
    Geneland.GUI : run : RunmcmcFmodel: no visible binding for global
    variable ‘pops’
    Geneland.GUI : run : RunmcmcFmodel: no visible binding for global
    variable ‘probs’
  • checking Rd files ... OK
    •
  • checking Rd cross-references ... OK
    •
  • checking for missing documentation entries ... OK
    •
  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • checking line endings in C/C++/Fortran sources/headers ... OK
    •
  • checking line endings in Makefiles ... OK
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  • checking for portable use of $BLAS_LIBS ... OK
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  • creating Geneland-Ex.R ... OK
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  • checking examples ... OK
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  • creating Geneland-manual.tex ... OK
    •
  • checking Geneland-manual.tex using pdflatex ... OK
    •