• using R version 2.8.1 (2008-12-22)
  • using session charset: UTF-8
  • checking for file 'BaM/DESCRIPTION' ... OK
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  • this is package 'BaM' version '0.93'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'BaM' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
    chol(solve(Wp.inv))): unused argument(s) (SqrtSigma =
    chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    plot.walk.MH: possible error in plot(walk.mat[1, 1], walk.mat[1, 2],
    type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
    round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
    argument(s) (walk.mat[1, 2], type = "n", xlim =
    round(range(walk.mat[, 1]) * 1.2), ylim = round(range(walk.mat[, 2])
    * 1.2), xlab = "", ylab = "")
    romney: possible error in plot(ruler, beta.prior, ylim = c(-0.7, 9.5),
    xaxt = "n", yaxt = "n", xlab = "", ylab = "", pch = "."): unused
    argument(s) (beta.prior, ylim = c(-0.7, 9.5), xaxt = "n", yaxt = "n",
    xlab = "", ylab = "", pch = ".")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    walk.G: possible error in plot(walk.mat[1, X], walk.mat[1, Y], type =
    "n", xlim = range(walk.mat[, X]), ylim = range(walk.mat[, Y]), xlab =
    "", ylab = ""): unused argument(s) (walk.mat[1, Y], type = "n", xlim
    = range(walk.mat[, X]), ylim = range(walk.mat[, Y]), xlab = "", ylab
    = "")
    Found possibly global 'T' or 'F' in the following function:
    sir
  • checking Rd files ... OK
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  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • checking data for non-ASCII characters ... OK
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  • creating BaM-Ex.R ... OK
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  • checking examples ... OK
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  • creating BaM-manual.tex ... OK
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  • checking BaM-manual.tex using pdflatex ... OK
    •