- using R version 2.15.0 (2012-03-30)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘BRugs/DESCRIPTION’ ... OK
- this is package ‘BRugs’ version ‘0.7-5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘BRugs’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
Found .Internal call in the following function:
‘modelSetWD’
with calls to .Internal functions
‘setwd’
Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... ERROR
Running the tests in ‘tests/BRugs.R’ failed.
Last 13 lines of output:
+ with(beetles,
+ BRugsFit(data = c("x", "n", "r", "N"), inits = "Beetlesinits.txt",
+ para=c("alpha", "beta", "rhat"), modelFile = "Beetlesmodel.txt",
+ numChains = 1, working.directory = tempdir())
+ )
+
+ }
Loading required package: coda
Loading required package: lattice
Welcome to BRugs connected to OpenBUGS version 3.2.1
Error in BRugsFit(data = "Ratsdata.txt", inits = "Ratsinits.txt", para = c("alpha", :
Ratsmodel.txt does not exist
Execution halted