• using R version 3.0.0 RC (2013-04-01 r62471)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'alphahull/DESCRIPTION' ... OK
• this is package 'alphahull' version '0.2-1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'alphahull' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
  partial argument match of 'nc' to 'ncol'
  ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
  partial argument match of 'byr' to 'byrow'
  ashape: warning in matrix(t(aux[in.ashape, ]), byrow = TRUE, nc = 12):
  partial argument match of 'nc' to 'ncol'
  complement: warning in matrix(mesh[case1.1, ], nr = n.case1.1): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(mesh[case1.2, ], nr = n.case1.2): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(matrix(mesh[case1.3, ], nr =
  n.case1.3)[case1.3.1, ], nr = n.case1.3.1): partial argument match of
  'nr' to 'nrow'
  complement: warning in matrix(mesh[case1.3, ], nr = n.case1.3): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(mesh[case2.1, ], nr = n.case2.1): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(mesh[case2.2, ], nr = n.case2.2): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(matrix(mesh[case2.3, ], nr =
  n.case2.3)[case2.3.1, ], nr = n.case2.3.1): partial argument match of
  'nr' to 'nrow'
  complement: warning in matrix(mesh[case2.3, ], nr = n.case2.3): partial
  argument match of 'nr' to 'nrow'
  complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
  match of 'nr' to 'nrow'
  complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
  match of 'nc' to 'ncol'
  delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
  delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
  delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
  delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
  delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
  delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
  koch: warning in matrix(nr = npoints, nc = 2): partial argument match
  of 'nr' to 'nrow'
  koch: warning in matrix(nr = npoints, nc = 2): partial argument match
  of 'nc' to 'ncol'
  koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
  nc = 2, byrow = TRUE): partial argument match of 'nr' to 'nrow'
  koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
  nc = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
  koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
  length(index1), nc = 2, byrow = TRUE): partial argument match of 'nr'
  to 'nrow'
  koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
  length(index1), nc = 2, byrow = TRUE): partial argument match of 'nc'
  to 'ncol'
  rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
  'nr' to 'nrow'
  rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
  'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/3.0/alphahull/libs/i386/alphahull.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
  (Fortran)
  Object: 'tripack.o'
  File 'd:/Rcompile/CRANpkg/lib/3.0/alphahull/libs/x64/alphahull.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
  (Fortran)
  Object: 'tripack.o'
  
  Compiled code should not call entry points which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files are already in R: 'jss.bst', 'jss.cls'
  Please remove them from your package.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  'd:/Rcompile/CRANpkg/local/3.0/alphahull.Rcheck/00check.log'
  for details.