• using R version 3.0.0 alpha (2013-03-06 r62144)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘rgenoud/DESCRIPTION’ ... OK
• this is package ‘rgenoud’ version ‘5.7-8.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rgenoud’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  genoud : fnLexicalSort: no visible binding for global variable ‘indx’
  genoud: multiple local function definitions for ‘fn1.bfgs’ with
  different formal arguments
  genoud: multiple local function definitions for ‘gr1’ with different
  formal arguments
  genoud: multiple local function definitions for ‘hess.fn’ with
  different formal arguments
  genoud_transform : fnLexicalSort: no visible binding for global
  variable ‘indx’
  genoud_transform: multiple local function definitions for ‘fn1.bfgs’
  with different formal arguments
  genoud_transform: multiple local function definitions for ‘gr1’ with
  different formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [181s/181s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [136s/136s] OK
  Running ‘tests.R’ [134s/134s]
  Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...4c4
  < ## rgenoud (Version 5.7-8.1, Build Date: 2012-06-03)
  ---
  > ## rgenoud (Version 5.7-8, Build Date: 2012-06-03)
  17c17
  < Wed Mar 6 18:35:53 2013
  ---
  > Sun Jun 3 12:21:44 2012
  175,176c175,176
  < Wed Mar 6 18:36:03 2013
  < Total run time : 0 hours 0 minutes and 10 seconds
  ---
  > Sun Jun 3 12:21:46 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  204c204
  < Wed Mar 6 18:36:03 2013
  ---
  > Sun Jun 3 12:21:46 2012
  362,363c362,363
  < Wed Mar 6 18:36:14 2013
  < Total run time : 0 hours 0 minutes and 11 seconds
  ---
  > Sun Jun 3 12:21:48 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  398c398
  < Wed Mar 6 18:36:14 2013
  ---
  > Sun Jun 3 12:21:48 2012
  478c478
  < #unique......... 1799, #Total UniqueCount: 12610
  ---
  > #unique......... 1798, #Total UniqueCount: 12609
  488c488
  < #unique......... 1814, #Total UniqueCount: 14424
  ---
  > #unique......... 1814, #Total UniqueCount: 14423
  498c498
  < #unique......... 1842, #Total UniqueCount: 16266
  ---
  > #unique......... 1842, #Total UniqueCount: 16265
  508c508
  < #unique......... 1853, #Total UniqueCount: 18119
  ---
  > #unique......... 1853, #Total UniqueCount: 18118
  518c518
  < #unique......... 1804, #Total UniqueCount: 19923
  ---
  > #unique......... 1804, #Total UniqueCount: 19922
  528c528
  < #unique......... 1849, #Total UniqueCount: 21772
  ---
  > #unique......... 1848, #Total UniqueCount: 21770
  538c538
  < #unique......... 1721, #Total UniqueCount: 23493
  ---
  > #unique......... 1721, #Total UniqueCount: 23491
  556,557c556,557
  < Wed Mar 6 18:36:37 2013
  < Total run time : 0 hours 0 minutes and 23 seconds
  ---
  > Sun Jun 3 12:21:50 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  606c606
  < Wed Mar 6 18:36:37 2013
  ---
  > Sun Jun 3 12:21:50 2012
  651c651
  < #unique......... 3040, #Total UniqueCount: 8040
  ---
  > #unique......... 3044, #Total UniqueCount: 8044
  665c665
  < #unique......... 3637, #Total UniqueCount: 11677
  ---
  > #unique......... 3637, #Total UniqueCount: 11681
  679c679
  < #unique......... 3424, #Total UniqueCount: 15101
  ---
  > #unique......... 3424, #Total UniqueCount: 15105
  693c693
  < #unique......... 3644, #Total UniqueCount: 18745
  ---
  > #unique......... 3644, #Total UniqueCount: 18749
  707c707
  < #unique......... 3362, #Total UniqueCount: 22107
  ---
  > #unique......... 3362, #Total UniqueCount: 22111
  721c721
  < #unique......... 3036, #Total UniqueCount: 25143
  ---
  > #unique......... 3036, #Total UniqueCount: 25147
  735c735
  < #unique......... 3077, #Total UniqueCount: 28220
  ---
  > #unique......... 3077, #Total UniqueCount: 28224
  749c749
  < #unique......... 3060, #Total UniqueCount: 31280
  ---
  > #unique......... 3060, #Total UniqueCount: 31284
  763c763
  < #unique......... 3061, #Total UniqueCount: 34341
  ---
  > #unique......... 3061, #Total UniqueCount: 34345
  777c777
  < #unique......... 3040, #Total UniqueCount: 37381
  ---
  > #unique......... 3040, #Total UniqueCount: 37385
  791c791
  < #unique......... 3017, #Total UniqueCount: 40398
  ---
  > #unique......... 3017, #Total UniqueCount: 40402
  805c805
  < #unique......... 3042, #Total UniqueCount: 43440
  ---
  > #unique......... 3042, #Total UniqueCount: 43444
  828,829c828,829
  < Wed Mar 6 18:38:04 2013
  < Total run time : 0 hours 1 minutes and 27 seconds
  ---
  > Sun Jun 3 12:21:57 2012
  > Total run time : 0 hours 0 minutes and 7 seconds
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [26s/26s] OK
• checking re-building of vignette PDFs ... [27s/27s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/rgenoud.Rcheck/00check.log’
  for details.