• using R Under development (unstable) (2013-03-05 r62132)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘gMCP/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gMCP’ version ‘0.8-0’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘highlight’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gMCP’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [30s/30s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [285s/285s] OK
  Running ‘doRUnit.R’ [283s/283s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [30s/30s] OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Loading required package: rJava
  Loading required package: CommonJavaJars
  Loading required package: MASS
  Loading required package: PolynomF
  Loading required package: multcomp
  Loading required package: mvtnorm
  Loading required package: survival
  Loading required package: splines
  Loading required package: JavaGD
  Loading required package: lattice
  make: Fatal error in reader: Makefile, line 16: Unexpected end of line seen
  Current working directory /home/ripley/R/packages/tests32/gMCP.Rcheck/vign_test/gMCP/inst/doc
  Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/gMCP.Rcheck/vign_test/gMCP") :
  running 'make' failed
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/ripley/R/packages/tests32/gMCP.Rcheck/00check.log’
  for details.