- using R version 3.0.0 alpha (2013-03-19 r62327)
- using platform: sparc-sun-solaris2.10 (32-bit)
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- this is package ‘BoolNet’ version ‘1.61’
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- checking examples ... ERROR
Running examples in ‘BoolNet-Ex.R’ failed
The error most likely occurred in:
> ### Name: BoolNet-package
> ### Title: Analyze Boolean networks
> ### Aliases: BoolNet-package BoolNet
> ### Keywords: package Boolean network probabilistic Boolean network PBN
> ### attractor cycle basin transition Markov chain simulation state graph
> ### reconstruction
>
> ### ** Examples
>
> ##################################
> # Example 1: identify attractors #
> ##################################
>
> # load example data
> data(cellcycle)
>
> # get all synchronous attractors by exhaustive search
> attractors <- getAttractors(cellcycle)
Error in stateMatrix[j, i] : subscript out of bounds
Calls: getAttractors -> canonicalStateOrder
Execution halted