• using R version 3.0.0 alpha (2013-03-15 r62270)
  • using platform: x86_64-apple-darwin10.8.0 (64-bit)
  • using session charset: ASCII
  • checking for file 'sos4R/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'sos4R' version '0.2-10'
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Package suggested but not available for checking: 'rgdal'
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package 'sos4R' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... NOTE
    File
    LICENCE
    is not mentioned in the DESCRIPTION file.
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking installed files from 'inst/doc' ... OK
  • checking examples ... WARNING
    checking a package with encoding 'UTF-8' in an ASCII locale

    OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... OK
    Running 'base.R'
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... NOTE
    Error in re-building vignettes:
    ...
    No converter found! Skipping field Salinity
    No converter found! Skipping field http://mmisw.org/ont/cf/parameter/sea_water_salinity
    No converter found! Skipping field NA

    Warning in FUN(X[[7L]], ...) :
    swe:Quantity given without unit of measurement: Salinity

    Attaching package: 'xtable'

    The following object is masked from 'package:maptools':

    label

    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
    Running 'texi2dvi' on 'sos4R.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `csquotes.sty' not found.

    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)

    sos4R.Rcheck/vign_test/sos4R/vignettes/sos4R.tex:19: ==> Fatal error occurred,
    no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
  • checking PDF version of manual ... OK
    WARNING: There was 1 warning.
    NOTE: There were 3 notes.
    See
    '/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.0/sos4R.Rcheck/00check.log'
    for details.
  • elapsed time (check, wall clock): 3:33