• using R version 3.0.0 alpha (2013-03-17 r62287)
• using platform: x86_64-apple-darwin10.8.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘multcomp/DESCRIPTION’ ... OK
• this is package ‘multcomp’ version ‘1.2-17’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘multcomp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... OK
• checking differences from ‘multcomp-Ex.Rout’ to ‘multcomp-Ex.Rout.save’ ...
  3c3
  < > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
  ---
  > > assign(".oldSearch", search(), pos = 'CheckExEnv')
  505c505
  < D - B == 0 4.3333 0.8679 4.993 0.000531 ***
  ---
  > D - B == 0 4.3333 0.8679 4.993 0.000398 ***
  938,939c938,939
  < otrend >= 0 -3.4821 2.0867 -1.669 0.2185
  < atrend >= 0 -314.7324 408.9901 -0.770 0.6625
  ---
  > otrend >= 0 -3.4821 2.0867 -1.669 0.2182
  > atrend >= 0 -314.7324 408.9901 -0.770 0.6621
  1509c1509
  < > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
  ---
  > > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘bugfix.R’
  Comparing ‘bugfix.Rout’ to ‘bugfix.Rout.save’ ...350,351c350,351
  < Male Female
  < "b" "a"
  ---
  > Female Male
  > "a" "b"
  Running ‘regtest-Tukey.R’
  Comparing ‘regtest-Tukey.Rout’ to ‘regtest-Tukey.Rout.save’ ... OK
  Running ‘regtest-anova.R’
  Comparing ‘regtest-anova.Rout’ to ‘regtest-anova.Rout.save’ ... OK
  Running ‘regtest-interface.R’
  Comparing ‘regtest-interface.Rout’ to ‘regtest-interface.Rout.save’ ... OK
  Running ‘regtest-lme.R’
  Comparing ‘regtest-lme.Rout’ to ‘regtest-lme.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Loading required package: nnet
  Loading required package: mvtnorm
  Loading required package: survival
  Loading required package: splines
  trying URL 'http://www.src.uchicago.edu/datalib/chfls/data/chfls1.sav'
  Content type 'text/plain' length 1963756 bytes (1.9 Mb)
  opened URL
  ==================================================
  downloaded 1.9 Mb
  
  Warning in `levels<-`(`*tmp*`, value = if (nl == nL) as.character(labels) else paste0(labels, :
  duplicated levels in factors are deprecated
  Warning in `levels<-`(`*tmp*`, value = if (nl == nL) as.character(labels) else paste0(labels, :
  duplicated levels in factors are deprecated
  Warning in `levels<-`(`*tmp*`, value = if (nl == nL) as.character(labels) else paste0(labels, :
  duplicated levels in factors are deprecated
  Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
  Running 'texi2dvi' on 'chfls1.tex' failed.
  LaTeX errors:
  ! LaTeX Error: File `utf8x.def' not found.
  
  Type X to quit or <RETURN> to proceed,
  or enter new name. (Default extension: def)
  Calls: buildVignettes -> texi2pdf -> texi2dvi
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.0/multcomp.Rcheck/00check.log’
  for details.
• elapsed time (check, wall clock): 2:03