• using R version 3.0.0 RC (2013-04-02 r62477)
• using platform: x86_64-apple-darwin10.8.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘diversitree/DESCRIPTION’ ... OK
• this is package ‘diversitree’ version ‘0.9-3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘diversitree’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... NOTE
  Foreign function calls with ‘PACKAGE’ argument in a different package:
  .C("node_depth", ..., PACKAGE = "ape")
  .Call("call_lsoda", ..., PACKAGE = "deSolve")
  See the chapter ‘System and foreign language interfaces’ of the
  ‘Writing R Extensions’ manual.
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘diversitree-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: make.quasse
  > ### Title: Quantitative State Speciation and Extinction Model
  > ### Aliases: make.quasse starting.point.quasse
  > ### Keywords: models
  >
  > ### ** Examples
  >
  > ## Example showing simple integration with two different backends,
  > ## plus the splits.
  > lambda <- function(x) sigmoid.x(x, 0.1, 0.2, 0, 2.5)
  > mu <- function(x) constant.x(x, 0.03)
  > char <- make.brownian.with.drift(0, 0.025)
  >
  > set.seed(1)
  > phy <- tree.quasse(c(lambda, mu, char), max.taxa=15, x0=0,
  + single.lineage=FALSE, verbose=TRUE)
  +: 3 [1.012]
  +: 4 [1.584]
  +: 5 [3.616]
  +: 6 [6.170]
  -: 5 [6.201]
  +: 6 [6.927]
  +: 7 [7.912]
  +: 8 [9.209]
  +: 9 [9.463]
  +: 10 [9.823]
  -: 9 [10.944]
  +: 10 [11.295]
  +: 11 [11.620]
  +: 12 [11.715]
  +: 13 [12.604]
  +: 14 [12.883]
  +: 15 [13.473]
  +: 16 [13.773]
  >
  > nodes <- c("nd13", "nd9", "nd5")
  > split.t <- Inf
  >
  > pars <- c(.1, .2, 0, 2.5, .03, 0, .01)
  > pars4 <- unlist(rep(list(pars), 4))
  >
  > sd <- 1/200
  > control.C.1 <- list(dt.max=1/200)
  >
  > control.R.1 <- list(dt.max=1/200, method="fftR")
  > lik.C.1 <- make.quasse(phy, phy$tip.state, sd, sigmoid.x, constant.x, control.C.1)
  Error in check.fftC() :
  diversitree was built without FFTW support. See Details in ?make.quasse
  Calls: make.quasse ... make.branches.quasse -> make.branches.quasse.fftC -> check.fftC
  Execution halted
• elapsed time (check, wall clock): 6:51