- using R version 3.0.0 alpha (2013-03-15 r62270)
- using platform: x86_64-apple-darwin10.8.0 (64-bit)
- using session charset: ASCII
- checking for file 'dcemriS4/DESCRIPTION' ... OK
- this is package 'dcemriS4' version '0.48'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package 'dcemriS4' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ... OK
- checking differences from 'dcemriS4-Ex.Rout' to 'dcemriS4-Ex.Rout.save' ...
3c3
< oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.3.9)
---
> oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.3.8)
9c9
< > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
---
> > assign(".oldSearch", search(), pos = 'CheckExEnv')
32c32
< 37.14845796 3.89506149 1.51615773 -0.01066014
---
> 37.14845917 3.89506144 1.51615753 -0.01066018
359c359
< [1] -0.009832147
---
> [1] -0.00983213
386,387c386,387
< [6,] 0.009912791 0.7331255 0.01475737 0.09028431
< [7,] 0.146992146 0.2043296 0.15691602 0.47338401
---
> [6,] 0.009912791 0.7331255 0.01475737 0.09028433
> [7,] 0.146992146 0.2043296 0.15691602 0.47338402
389c389
< [9,] 0.387767110 0.4608153 0.43840557 0.50468089
---
> [9,] 0.387767110 0.4608153 0.43840557 0.50468088
392c392
< [12,] 0.250521815 0.3476498 0.28871475 0.50510375
---
> [12,] 0.250521815 0.3476498 0.28871475 0.50510374
405c405
< [1,] 0.0600 1.840405e-03 1.371417e-03
---
> [1,] 0.0600 1.840405e-03 1.371419e-03
407c407
< [3,] 0.0600 2.818906e-02 2.771863e-02
---
> [3,] 0.0600 2.818906e-02 2.771864e-02
411,412c411,412
< [7,] 0.0600 3.971422e-02 3.895468e-02
< [8,] 0.0600 1.899215e-02 1.873550e-02
---
> [7,] 0.0600 3.971422e-02 3.895469e-02
> [8,] 0.0600 1.899215e-02 1.873551e-02
414c414
< [10,] 0.0001 1.128817e-17 3.025093e-18
---
> [10,] 0.0001 1.128817e-17 3.025355e-18
629c629
< > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
---
> > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... NOTE
Error in re-building vignettes:
...
Warning in nls.lm(par = guess, fn = func, control = control, signal = signal, :
lmdif: info = -1. Number of iterations has reached `maxiter' == 50.
Warning in nls.lm(par = guess, fn = func, control = control, signal = signal, :
lmdif: info = -1. Number of iterations has reached `maxiter' == 50.
Warning in nls.lm(par = guess, fn = func, control = control, signal = signal, :
lmdif: info = -1. Number of iterations has reached `maxiter' == 50.
Warning in log(fit.list[[k]]$E10) : NaNs produced
Warning in log(fit.list[[k]]$E10) : NaNs produced
Warning in log(fit.list[[k]]$E10) : NaNs produced
Warning in log(fit.list[[k]]$E10) : NaNs produced
Warning in split.default(1/drop(R1$R10), as.factor(drop(pmask))) :
data length is not a multiple of split variable
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'dcemriS4.tex' failed.
LaTeX errors:
! LaTeX Error: File `a4wide.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.0/dcemriS4.Rcheck/00check.log'
for details.
- elapsed time (check, wall clock): 2:50