- using R version 2.11.1 Patched (2010-07-29 r52657)
- using session charset: ISO8859-1
- checking for file 'latentnet/DESCRIPTION' ... OK
- this is package 'latentnet' version '2.4-0'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'latentnet' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... ERROR
Running examples in 'latentnet-Ex.R' failed.
The error most likely occurred in:
> ### * ergmm
>
> flush(stderr()); flush(stdout())
>
> ### Name: ergmm
> ### Title: Fit a Latent Space Random Graph Model
> ### Aliases: ergmm latent latentcluster
> ### Keywords: graphs
>
> ### ** Examples
>
>
> #
> # Use 'data(package = "latentnet")' to list the data sets in a
> #
> data(package="latentnet")
Data sets in package 'latentnet':
davis Southern Women Data Set (Davis) as a bipartite
"network" object
samplike (sampson) Cumulative network of positive affection within
a monastery as a "network" object
tribes Read Highland Tribes
> #
> # Using Sampson's Monk data, lets fit a
> # simple latent position model
> #
> data(sampson)
> samp.fit <- ergmm(samplike ~ euclidean(d=2))
> #
> # See if we have convergence in the MCMC
> mcmc.diagnostics(samp.fit)
Chain 1
Lag 0
lpY beta.1 Z.1.1 Z.1.2
lpY 1.000000000 0.46717035 -0.002357451 -0.2217758
beta.1 0.467170351 1.00000000 0.088188845 -0.3054021
Z.1.1 -0.002357451 0.08818885 1.000000000 0.2925447
Z.1.2 -0.221775763 -0.30540213 0.292544686 1.0000000
Lag 10
lpY beta.1 Z.1.1 Z.1.2
lpY 0.29206352 0.25358755 -0.02301355 -0.1225387
beta.1 0.23886452 0.31507724 -0.02229373 -0.1181561
Z.1.1 -0.02637175 -0.01657416 0.40780400 0.1871902
Z.1.2 -0.12697716 -0.11889265 0.16052441 0.3994369
[[1]]
Quantile (q) = 0.025
Accuracy (r) = +/- 0.0125
Probability (s) = 0.95
Burn-in Total Lower bound Dependence
(M) (N) (Nmin) factor (I)
lpY 30 6750 600 11.2
beta.1 30 6610 600 11.0
Z.1.1 40 7970 600 13.3
Z.1.2 40 7490 600 12.5
> #
> # Plot the fit
> #
> plot(samp.fit)
Error: object 'e.curv.as.mult' not found
Execution halted