• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'hydrosanity/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'hydrosanity' version '0.8.76'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'hydrosanity' can be installed ... WARNING
  Found the following significant warnings:
  Warning: replacing previous import 'update' when loading 'stats'
  Warning: replacing previous import 'update' when loading 'stats'
  See http://www.r-project.org/nosvn/R.check/r-patched-windows64-x86_64/hydrosanity-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .hs_layers_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_layers_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_layers_event: no visible binding for global variable 'add.cities'
  .hs_layers_event: no visible global function definition for
  'plotAndPlaySetCurrState'
  .hs_layers_event: no visible global function definition for
  'plotAndPlayUpdate'
  .hs_map_setregion_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_map_setregion_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_on_corr_calculate_contiguous_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_corr_ccfplot_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_corr_relationplot_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_explore_cdf_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_explore_seasonal_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_explore_timeseries_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_export_button_clicked: no visible binding for global variable
  'hsp'
  .hs_on_import_file_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_import_makefactor_button_clicked: no visible binding for global
  variable 'tmp.factor'
  .hs_on_import_summary_treeview_role_edited: no visible binding for
  global variable 'hsp'
  .hs_on_import_viewtable_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_import_viewtable_button_clicked: no visible binding for '<<-'
  assignment to 'hsp'
  .hs_on_impute_calculate_gaps_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_impute_missing_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_impute_missingatrandom_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_impute_view_error_scatter_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_menu_about_activate: no visible global function definition for
  'gladeXMLNew'
  .hs_on_menu_quit_activate: no visible binding for global variable 'hsp'
  .hs_on_menu_quit_activate: no visible binding for global variable 'win'
  .hs_on_menu_quit_activate: no visible binding for global variable 'GUI'
  .hs_on_multivar_lagseries_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_multivar_relationplot_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_rain_view_grids_button_clicked : <anonymous>: no visible binding
  for global variable 'hsp'
  .hs_on_rain_view_grids_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_rain_view_mosaic_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_rain_view_surface_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_rain_view_surface_button_clicked : <anonymous>: no visible
  binding for global variable 'hsp'
  .hs_on_scope_import_button_clicked: no visible binding for global
  variable 'tmp.sites'
  .hs_on_scope_viewdbsitemap_button_clicked : <anonymous>: no visible
  binding for global variable 'hsp'
  .hs_on_scope_viewdbsitemap_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_scope_viewdbsitemap_button_clicked: no visible binding for
  global variable 'tmp.sites'
  .hs_on_scope_viewdbtimeline_button_clicked: no visible binding for
  global variable 'hsp'
  .hs_on_scope_viewdbtimeline_button_clicked: no visible binding for
  global variable 'tmp.sites'
  .hs_on_scope_viewsitemap_button_clicked: no visible binding for global
  variable 'hsp'
  .hs_on_scope_viewsitemap_button_clicked : <anonymous>: no visible
  binding for global variable 'hsp'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlayMakePrompt'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlayUnmakePrompt'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlaySetPrompt'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlaySetCurrState'
  .hs_time_centre_event: no visible global function definition for
  'plotAndPlayUpdate'
  .hs_time_logscale_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_time_logscale_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_time_logscale_event: no visible global function definition for
  'plotAndPlaySetCurrState'
  .hs_time_logscale_event: no visible global function definition for
  'plotAndPlayUpdate'
  .hs_time_setperiod_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_time_setperiod_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlayMakePrompt'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlayUnmakePrompt'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlaySetPrompt'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlaySetCurrState'
  .hs_time_zoomin_event: no visible global function definition for
  'plotAndPlayUpdate'
  .hs_time_zoomout_event: no visible global function definition for
  'plotAndPlayGetCurrState'
  .hs_time_zoomout_event: no visible global function definition for
  'plotAndPlayGetToolbar'
  .hs_time_zoomout_event: no visible global function definition for
  'plotAndPlaySetCurrState'
  .hs_time_zoomout_event: no visible global function definition for
  'plotAndPlayUpdate'
  datasetModificationUpdate: no visible binding for '<<-' assignment to
  'hsp'
  datasetModificationUpdate: no visible binding for global variable 'hsp'
  hydrosanity: no visible global function definition for 'gladeXMLNew'
  hydrosanity: no visible global function definition for
  'gladeXMLSignalAutoconnect'
  iconViewSetSelection: no visible binding for global variable 'hsp'
  openProject: no visible binding for '<<-' assignment to 'hsp'
  openProject: no visible binding for global variable 'hsp'
  panel.cities: no visible binding for global variable 'world.cities'
  regionModificationUpdate: no visible binding for '<<-' assignment to
  'hsp'
  regionModificationUpdate: no visible binding for global variable 'hsp'
  saveProject: no visible binding for global variable 'hsp'
  saveProject: no visible binding for '<<-' assignment to 'hsp'
  setPeriodTool: no visible global function definition for 'quickTool'
  setRegionTool: no visible global function definition for 'quickTool'
  setupIconView: no visible binding for global variable 'hsp'
  timeperiodModificationUpdate: no visible binding for '<<-' assignment
  to 'hsp'
  timeperiodModificationUpdate: no visible binding for global variable
  'hsp'
  updateImportPage: no visible binding for global variable 'hsp'
  updateMultivarPage: no visible binding for global variable 'hsp'
  updateSummaryPage: no visible binding for global variable 'hsp'
  updateTimePeriodPage: no visible binding for global variable 'hsp'
• checking Rd files ... NOTE
  prepare_Rd: aggregate.timeblob.Rd:31-33: Dropping empty section \examples
  prepare_Rd: gaps.Rd:38-39: Dropping empty section \examples
  prepare_Rd: grid.timeline.plot.Rd:46-48: Dropping empty section \examples
  prepare_Rd: grid.timeseries.plot.Rd:64-66: Dropping empty section \examples
  prepare_Rd: grid.xaxis.POSIXt.Rd:30-32: Dropping empty section \examples
  prepare_Rd: grid.yaxis.log.Rd:43-45: Dropping empty section \examples
  prepare_Rd: hydrosanity.caption.Rd:33-35: Dropping empty section \examples
  prepare_Rd: impute.timeblobs.Rd:47-49: Dropping empty section \examples
  prepare_Rd: read.timeblob.Rd:37-39: Dropping empty section \details
  prepare_Rd: read.timeblob.Rd:45-47: Dropping empty section \examples
  prepare_Rd: smooth.timeblob.Rd:27-29: Dropping empty section \examples
  prepare_Rd: summaryMissing.timeblobs.Rd:28-30: Dropping empty section \examples
  prepare_Rd: sync.timeblobs.Rd:41-43: Dropping empty section \examples
  prepare_Rd: timeblob.Rd:45-47: Dropping empty section \examples
  prepare_Rd: truncMonth.Rd:30-32: Dropping empty section \examples
  prepare_Rd: window.timeblob.Rd:45-47: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... WARNING
  Auto-generated content requiring editing in Rd object 'aggregate.timeblob':
  \description
  \details
  \author
  \arguments, description of item 'by'
  \arguments, description of item 'FUN'
  \arguments, description of item 'fun.qual'
  \arguments, description of item 'start.month'
  \arguments, description of item '\dots'
  
  Auto-generated content requiring editing in Rd object 'gaps':
  \description
  \details
  \author
  \arguments, description of item 'x'
  \arguments, description of item 'internal.only'
  \arguments, description of item 'max.length'
  \arguments, description of item 'info'
  
  Auto-generated content requiring editing in Rd object 'grid.timeline.plot':
  \description
  \details
  \author
  \arguments, description of item 'blob.list'
  \arguments, description of item 'xlim'
  \arguments, description of item 'ylim'
  \arguments, description of item 'colMap'
  \arguments, description of item 'auto.key'
  \arguments, description of item 'maxLabelChars'
  \arguments, description of item 'pad'
  \arguments, description of item 'grill'
  \arguments, description of item 'main'
  \arguments, description of item 'sub'
  \arguments, description of item 'newpage'
  \arguments, description of item 'blob'
  \arguments, description of item 'name'
  \arguments, description of item 'vp'
  
  Auto-generated content requiring editing in Rd object 'grid.timeseries.plot':
  \description
  \details
  \author
  \arguments, description of item 'blob.list'
  \arguments, description of item 'xlim'
  \arguments, description of item 'ylim'
  \arguments, description of item 'sameScales'
  \arguments, description of item 'logScale'
  \arguments, description of item 'qualTimeline'
  \arguments, description of item 'colMap'
  \arguments, description of item 'auto.key'
  \arguments, description of item 'maxLabelChars'
  \arguments, description of item 'pad'
  \arguments, description of item 'between'
  \arguments, description of item 'superPos'
  \arguments, description of item 'newScale'
  \arguments, description of item 'main'
  \arguments, description of item 'sub'
  \arguments, description of item 'newpage'
  \arguments, description of item 'nSuperpose'
  \arguments, description of item 'gp'
  \arguments, description of item 'superpose.blob.list'
  \arguments, description of item 'allSameScales'
  \arguments, description of item '\dots'
  \arguments, description of item 'blob'
  
  Auto-generated content requiring editing in Rd object 'grid.xaxis.POSIXt':
  \description
  \details
  \author
  \arguments, description of item 'lim'
  \arguments, description of item 'label'
  \arguments, description of item 'draw'
  \arguments, description of item 'name'
  \arguments, description of item '\dots'
  
  Auto-generated content requiring editing in Rd object 'grid.yaxis.log':
  \description
  \details
  \author
  \arguments, description of item 'logLim'
  \arguments, description of item 'label'
  \arguments, description of item 'draw'
  \arguments, description of item 'name'
  \arguments, description of item 'lim'
  \arguments, description of item '\dots'
  
  Auto-generated content requiring editing in Rd object 'hydrosanity.caption':
  \description
  \details
  \author
  \arguments, description of item 'timelim'
  \arguments, description of item 'by'
  \arguments, description of item 'n'
  \arguments, description of item 'series'
  \arguments, description of item 'x'
  \arguments, description of item 'y'
  \arguments, description of item 'just'
  \arguments, description of item 'gp'
  
  Auto-generated content requiring editing in Rd object 'impute.timeblobs':
  \description
  \details
  \author
  \arguments, description of item 'blob.list'
  \arguments, description of item 'which.impute'
  \arguments, description of item 'timelim'
  \arguments, description of item 'extend'
  \arguments, description of item 'withinTimeframe'
  \arguments, description of item 'method'
  \arguments, description of item 'constant'
  \arguments, description of item 'trim'
  \arguments, description of item 'type'
  \arguments, description of item 'fallBackToConstantDisaccum'
  \arguments, description of item 'maxGapLength'
  \arguments, description of item '\dots'
  \arguments, description of item 'blob'
  
  Auto-generated content requiring editing in Rd object 'smooth.timeblob':
  \description
  \details
  \author
  \arguments, description of item 'blob'
  \arguments, description of item 'by'
  
  Auto-generated content requiring editing in Rd object 'summaryMissing.timeblobs':
  \description
  \details
  \author
  \arguments, description of item 'blob.list'
  \arguments, description of item 'timelim'
  \arguments, description of item 'timestep'
  
  Auto-generated content requiring editing in Rd object 'sync.timeblobs':
  \description
  \details
  \author
  \arguments, description of item 'blob.list'
  \arguments, description of item 'timestep'
  \arguments, description of item 'timelim'
  \arguments, description of item 'extractColumn'
  \arguments, description of item 'blob'
  \arguments, description of item 'times'
  \arguments, description of item 'default'
  
  Auto-generated content requiring editing in Rd object 'timeblob':
  \description
  \details
  \author
  \arguments, description of item 'Time'
  \arguments, description of item 'Data'
  \arguments, description of item 'Qual'
  \arguments, description of item 'extras'
  \arguments, description of item 'timestep'
  \arguments, description of item 'sitename'
  \arguments, description of item 'dataname'
  \arguments, description of item 'role'
  \arguments, description of item 'x'
  \arguments, description of item 'blob.list'
  \arguments, description of item 'FUN'
  \arguments, description of item '\dots'
  
  Auto-generated content requiring editing in Rd object 'truncMonth':
  \description
  \details
  \author
  \arguments, description of item 'x'
  
  Auto-generated content requiring editing in Rd object 'window.timeblob':
  \description
  \details
  \author
  \arguments, description of item 'x'
  \arguments, description of item 'start'
  \arguments, description of item 'end'
  \arguments, description of item 'inclusive'
  \arguments, description of item 'return.indices'
  \arguments, description of item 'extend'
  \arguments, description of item '\dots'
  
• checking examples ... OK
• checking PDF version of manual ... OK