• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'StatFingerprints/DESCRIPTION' ... OK
• this is package 'StatFingerprints' version '2.0'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'StatFingerprints' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Robject2SFGUI: no visible binding for '<<-' assignment to 'none'
  Robject2SFGUI: no visible binding for '<<-' assignment to 'aaa'
  Robject2SFGUI: no visible binding for global variable 'aaa'
  Robject2SFGUI : ess: no visible binding for global variable 'aaa'
  StatFingerprints: no visible binding for '<<-' assignment to 'filename'
  StatFingerprints: no visible binding for global variable 'filename'
  StatFingerprints: no visible binding for '<<-' assignment to 'mat.raw'
  StatFingerprints: no visible binding for global variable 'mat'
  StatFingerprints: no visible binding for global variable 'mat.raw'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.align'
  StatFingerprints: no visible binding for global variable 'mat1'
  StatFingerprints: no visible binding for global variable 'mat.align'
  StatFingerprints: no visible binding for '<<-' assignment to 'rxref'
  StatFingerprints: no visible binding for global variable 'rxref'
  StatFingerprints: no visible binding for '<<-' assignment to 'fact'
  StatFingerprints: no visible binding for global variable 'fact'
  StatFingerprints: no visible binding for '<<-' assignment to 'param'
  StatFingerprints: no visible binding for global variable 'param'
  StatFingerprints: no visible binding for '<<-' assignment to 'div'
  StatFingerprints: no visible binding for global variable 'div'
  StatFingerprints: no visible binding for '<<-' assignment to 'alig'
  StatFingerprints: no visible binding for global variable 'alig'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.background'
  StatFingerprints: no visible binding for global variable 'mat2'
  StatFingerprints: no visible binding for global variable
  'mat.background'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.baseline'
  StatFingerprints: no visible binding for global variable 'mat3'
  StatFingerprints: no visible binding for global variable 'mat.baseline'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.range'
  StatFingerprints: no visible binding for global variable 'mat5'
  StatFingerprints: no visible binding for global variable 'mat.range'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.analyse'
  StatFingerprints: no visible binding for global variable 'mat6'
  StatFingerprints: no visible binding for global variable 'mat.analyse'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.normalise'
  StatFingerprints: no visible binding for global variable 'mat7'
  StatFingerprints: no visible binding for global variable
  'mat.normalise'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.rebuilt'
  StatFingerprints: no visible binding for global variable 'mat8'
  StatFingerprints: no visible binding for global variable 'mat.rebuilt'
  StatFingerprints: no visible binding for '<<-' assignment to
  'mat.binary'
  StatFingerprints: no visible binding for global variable 'mat9'
  StatFingerprints: no visible binding for global variable 'mat.binary'
  StatFingerprints : export.matrix: no visible binding for global
  variable 'mat.raw'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.raw'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'div'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'alig'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.align'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.background'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.baseline'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.range'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.normalise'
  StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.binary'
  StatFingerprints : edit.div: no visible binding for '<<-' assignment to
  'div'
  StatFingerprints : edit.div: no visible binding for global variable
  'div'
  StatFingerprints : edit.summary.div: no visible binding for global
  variable 'div'
  StatFingerprints : edit.fact: no visible binding for '<<-' assignment
  to 'fact'
  StatFingerprints : edit.fact: no visible binding for global variable
  'fact'
  StatFingerprints : edit.summary.fact: no visible binding for global
  variable 'fact'
  StatFingerprints : edit.param: no visible binding for '<<-' assignment
  to 'param'
  StatFingerprints : edit.param: no visible binding for global variable
  'param'
  StatFingerprints : edit.summary.param: no visible binding for global
  variable 'param'
  StatFingerprints : .write: no visible binding for global variable
  'filename'
  StatFingerprints : .write: no visible binding for global variable
  'alig'
  StatFingerprints : .write: no visible binding for global variable
  'mat.raw'
  StatFingerprints : .write: no visible binding for global variable 'div'
  StatFingerprints : .write: no visible binding for global variable
  'fact'
  StatFingerprints : .write: no visible binding for global variable
  'param'
  StatFingerprints : .write: no visible binding for global variable
  'rxref'
  StatFingerprints : .write: no visible binding for global variable
  'mat.background'
  StatFingerprints : .write: no visible binding for global variable
  'mat.baseline'
  StatFingerprints : .write: no visible binding for global variable
  'mat.range'
  StatFingerprints : .write: no visible binding for global variable
  'mat.normalise'
  StatFingerprints : .write: no visible binding for global variable
  'mat.binary'
  StatFingerprints : run: no visible binding for global variable 'txt'
  align: no visible binding for global variable 'mat.raw'
  alignGUI: no visible binding for global variable 'mat.raw'
  alignGUI: no visible binding for global variable 'rxref'
  alignGUI2: no visible binding for global variable 'alig'
  alignGUI2 : select.profile: no visible binding for global variable
  'mat.raw'
  alignGUI2 : select.profile: no visible binding for global variable
  'rxref'
  alignGUI2 : select.profile: no visible binding for '<<-' assignment to
  'mat.analyse'
  anovaGUI: no visible binding for global variable 'param'
  anovaGUI: no visible binding for global variable 'div'
  anovaGUI: no visible binding for global variable 'mat.analyse'
  anovaGUI: no visible binding for global variable 'fact'
  anovaGUI: no visible binding for '<<-' assignment to 'j'
  anovaGUI : create.model: no visible binding for global variable 'j'
  anovaGUI : create.model: no visible binding for '<<-' assignment to 'j'
  anovaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
  anovaGUI : compute.anova: no visible binding for global variable 'ano2'
  anovaGUI : compute.anova: no visible binding for global variable 'fact'
  anovaGUI : test.tukey: no visible binding for global variable 'ano2'
  anovaGUI : test.tukey: no visible binding for global variable 'fact'
  askquitGUI: no visible binding for global variable 'MainMenu'
  baselineGUI: no visible binding for global variable 'mat.align'
  baselineGUI : compute.baseline: no visible binding for '<<-' assignment
  to 'mat.analyse'
  best.nmdsGUI : compute.nmds: no visible binding for global variable
  'mat.binary'
  best.nmdsGUI : compute.nmds: no visible binding for global variable
  'mat.analyse'
  best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to
  'fact_temp'
  best.nmdsGUI : compute.nmds: no visible binding for global variable
  'fact'
  best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to
  'param_temp'
  best.nmdsGUI : compute.nmds: no visible binding for global variable
  'param'
  best.nmdsGUI : save.nmds: no visible binding for global variable
  'fact_temp'
  best.nmdsGUI : save.nmds: no visible binding for global variable
  'param_temp'
  best.ordination: no visible global function definition for 'reg.line'
  best.ordinationGUI : best.ordination.selection: no visible binding for
  global variable 'mat.analyse'
  binaryGUI: no visible binding for global variable 'mat.range'
  binaryGUI : help.binary: no visible binding for global variable
  'mat.raw'
  binaryGUI : help.binary : plot.binary: no visible binding for global
  variable 'mat.analyse'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.align'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.background'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.baseline'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.range'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.normalise'
  binaryGUI : compute.binary: no visible binding for global variable
  'mat.rebuilt'
  binaryGUI : compute.binary: no visible binding for '<<-' assignment to
  'mat.analyse'
  capscaleGUI: no visible binding for global variable 'param'
  capscaleGUI: no visible binding for global variable 'div'
  capscaleGUI: no visible binding for global variable 'mat.analyse'
  capscaleGUI: no visible binding for '<<-' assignment to
  'mat.analyse.na'
  capscaleGUI: no visible binding for '<<-' assignment to 'j'
  capscaleGUI : create.model: no visible binding for global variable 'j'
  capscaleGUI : create.model: no visible binding for '<<-' assignment to
  'j'
  capscaleGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
  capscaleGUI : compute.capscale: no visible binding for global variable
  'ano2'
  capscaleGUI : stepwise.capscale: no visible binding for global variable
  'ano2'
  capscaleGUI : partial.capscale: no visible binding for global variable
  'ano2'
  capscaleGUI : plot.capscale: no visible binding for global variable
  'ano2'
  ccaGUI: no visible binding for global variable 'param'
  ccaGUI: no visible binding for global variable 'div'
  ccaGUI: no visible binding for global variable 'mat.analyse'
  ccaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na'
  ccaGUI: no visible binding for '<<-' assignment to 'j'
  ccaGUI : create.model: no visible binding for global variable 'j'
  ccaGUI : create.model: no visible binding for '<<-' assignment to 'j'
  ccaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
  ccaGUI : compute.cca: no visible binding for global variable 'ano2'
  ccaGUI : stepwise.cca: no visible binding for global variable 'ano2'
  ccaGUI : partial.cca: no visible binding for global variable 'ano2'
  ccaGUI : plot.cca: no visible binding for global variable 'ano2'
  checkfact: no visible binding for global variable 'fact'
  checkparam: no visible binding for global variable 'param'
  checkparam: no visible binding for global variable 'div'
  checkprofile: no visible binding for global variable 'mat.raw'
  convertGUI: no visible binding for '<<-' assignment to 'zf3'
  convertGUI : view.channels: no visible binding for global variable
  'zf3'
  convertGUI : view.channels : plot.channel: no visible binding for
  global variable 'zf3'
  convertGUI: no visible binding for global variable 'zf3'
  convertGUI : import.channels: no visible binding for global variable
  'zf3'
  convertGUI : import.channels: no visible binding for '<<-' assignment
  to 'mat.raw'
  convertGUI : import.channels: no visible binding for '<<-' assignment
  to 'mat.analyse'
  convertGUI : import.channels: no visible binding for global variable
  'MainMenu'
  correlationGUI: no visible binding for global variable 'param'
  correlationGUI: no visible binding for global variable 'div'
  correlationGUI: no visible binding for global variable 'mat.analyse'
  delete.backgroundGUI: no visible binding for global variable
  'mat.range'
  delete.backgroundGUI: no visible binding for global variable
  'mat.normalise'
  delete.backgroundGUI : load.delete.background: no visible binding for
  '<<-' assignment to 'mat.background'
  delete.backgroundGUI : load.delete.background: no visible binding for
  '<<-' assignment to 'mat.analyse'
  deleteGUI: no visible binding for global variable 'alig'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.raw'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.raw'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'div'
  deleteGUI : delete.profile: no visible binding for global variable
  'div'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'param'
  deleteGUI : delete.profile: no visible binding for global variable
  'param'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.align'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.align'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'alig'
  deleteGUI : delete.profile: no visible binding for global variable
  'alig'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.background'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.background'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.baseline'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.baseline'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.range'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.range'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.analyse'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.analyse'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.normalise'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.normalise'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.rebuilt'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.rebuilt'
  deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.binary'
  deleteGUI : delete.profile: no visible binding for global variable
  'mat.binary'
  deletefactGUI : select.factor: no visible binding for global variable
  'fact'
  deletefactGUI : select.factor : select.level: no visible binding for
  global variable 'fact'
  deletefactGUI : select.factor : select.level: no visible binding for
  global variable 'ae'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'ae'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'mat.raw'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.raw'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'div'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'div'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'param'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'param'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'alig'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'alig'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.align'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.align'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.background'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.background'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.baseline'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.baseline'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.range'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.range'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.analyse'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.analyse'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.normalise'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.normalise'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.rebuilt'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.rebuilt'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.binary'
  deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.binary'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'ae'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.raw'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.raw'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'div'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'div'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'param'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'param'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'alig'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'alig'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.align'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.align'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.background'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable
  'mat.background'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.baseline'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.baseline'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.range'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.range'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.analyse'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.analyse'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.normalise'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.normalise'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.rebuilt'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.rebuilt'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.binary'
  deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.binary'
  deletefactGUI : select.factor : select.level : window.factor: no
  visible binding for global variable 'MainMenu'
  deletefactGUI : select.factor : window.level: no visible binding for
  '<<-' assignment to 'ae'
  dendroGUI : compute.dendrogram: no visible binding for global variable
  'mat.binary'
  dendroGUI : compute.dendrogram: no visible binding for global variable
  'mat.analyse'
  des.univGUI: no visible binding for global variable 'param'
  des.univGUI: no visible binding for global variable 'div'
  des.univGUI: no visible binding for global variable 'mat.analyse'
  des.univGUI: no visible binding for global variable 'fact'
  des.univGUI : compute.shapiro.test: no visible binding for global
  variable 'div'
  des.univGUI : compute.bartlett.test: no visible binding for global
  variable 'div'
  diversities: no visible binding for global variable 'backgr'
  diversities: no visible binding for global variable 'mat.binary'
  diversitiesGUI: no visible binding for global variable 'mat.binary'
  diversitiesGUI : help.define.peak: no visible binding for global
  variable 'mat.raw'
  diversitiesGUI : help.define.peak : count.peaks: no visible binding for
  global variable 'mat.analyse'
  diversitiesGUI : compute.diversity: no visible binding for global
  variable 'mat.analyse'
  diversitiesGUI : export.diversity: no visible binding for global
  variable 'div'
  export.distGUI: no visible binding for global variable 'mat.raw'
  export.distGUI : OnOK: no visible binding for global variable
  'mat.analyse'
  export.distGUI : OnOK: no visible global function definition for
  'dsvdist'
  export.distGUI : OnOK: no visible binding for global variable
  'mat.binary'
  ffcorGUI: no visible binding for global variable 'param'
  ffcorGUI: no visible binding for global variable 'div'
  ffcorGUI: no visible binding for global variable 'mat.analyse'
  globalanosimGUI: no visible binding for global variable 'fact'
  globalanosimGUI : compute.anosim: no visible binding for global
  variable 'mat.binary'
  globalanosimGUI : compute.anosim: no visible binding for global
  variable 'mat.analyse'
  globalanosimGUI : compute.anosim: no visible binding for global
  variable 'fact'
  graphfactGUI: no visible binding for global variable 'param'
  graphfactGUI: no visible binding for global variable 'div'
  graphfactGUI: no visible binding for global variable 'mat.analyse'
  graphfactGUI: no visible binding for global variable 'fact'
  graphfactGUI : graphfact : casun: no visible binding for global
  variable 'fact'
  graphfactGUI : graphfact : casun : ajseg: no visible binding for global
  variable 'fact'
  graphfactGUI : graphfact : casdeux: no visible binding for global
  variable 'fact'
  graphfactGUI : graphfact : casdeux : casdeuxd: no visible binding for
  global variable 'fact'
  heat.mapGUI : compute.heatmap: no visible binding for global variable
  'mat.binary'
  heat.mapGUI : compute.heatmap: no visible binding for global variable
  'mat.analyse'
  importGUI1 : import.channels: no visible binding for '<<-' assignment
  to 'mat.analyse'
  importGUI2 : import.file: no visible binding for global variable
  'mat.raw'
  importGUI2 : import.file: no visible binding for global variable
  'MainMenu'
  iterative.testGUI: no visible binding for global variable 'fact'
  iterative.testGUI : select.factor: no visible binding for '<<-'
  assignment to 'ae'
  iterative.testGUI : select.factor: no visible binding for global
  variable 'fact'
  iterative.testGUI : select.factor: no visible binding for global
  variable 'ae'
  iterative.testGUI : select.factor: no visible binding for global
  variable 'mat.binary'
  iterative.testGUI : select.factor: no visible binding for global
  variable 'mat.analyse'
  iterative.testGUI1: no visible binding for '<<-' assignment to 'a'
  iterative.testGUI1 : compute.iterative: no visible binding for '<<-'
  assignment to 'niv'
  iterative.testGUI1 : compute.iterative: no visible binding for global
  variable 'niv'
  iterative.testGUI1 : view.distribution: no visible binding for global
  variable 'a'
  iterative.testGUI1 : view.distribution: no visible binding for global
  variable 'niv'
  loadGUI: no visible binding for '<<-' assignment to 'filename'
  loadGUI: no visible binding for global variable 'filename'
  loadGUI: no visible binding for '<<-' assignment to 'mat.raw'
  loadGUI: no visible binding for global variable 'mat'
  loadGUI: no visible binding for global variable 'mat.raw'
  loadGUI: no visible binding for '<<-' assignment to 'mat.align'
  loadGUI: no visible binding for global variable 'mat1'
  loadGUI: no visible binding for global variable 'mat.align'
  loadGUI: no visible binding for '<<-' assignment to 'rxref'
  loadGUI: no visible binding for global variable 'rxref'
  loadGUI: no visible binding for '<<-' assignment to 'fact'
  loadGUI: no visible binding for global variable 'fact'
  loadGUI: no visible binding for '<<-' assignment to 'param'
  loadGUI: no visible binding for global variable 'param'
  loadGUI: no visible binding for '<<-' assignment to 'alig'
  loadGUI: no visible binding for global variable 'alig'
  loadGUI: no visible binding for '<<-' assignment to 'mat.background'
  loadGUI: no visible binding for global variable 'mat2'
  loadGUI: no visible binding for global variable 'mat.background'
  loadGUI: no visible binding for '<<-' assignment to 'mat.baseline'
  loadGUI: no visible binding for global variable 'mat3'
  loadGUI: no visible binding for global variable 'mat.baseline'
  loadGUI: no visible binding for '<<-' assignment to 'mat.range'
  loadGUI: no visible binding for global variable 'mat5'
  loadGUI: no visible binding for global variable 'mat.range'
  loadGUI: no visible binding for '<<-' assignment to 'mat.analyse'
  loadGUI: no visible binding for global variable 'mat6'
  loadGUI: no visible binding for global variable 'mat.analyse'
  loadGUI: no visible binding for '<<-' assignment to 'mat.normalise'
  loadGUI: no visible binding for global variable 'mat7'
  loadGUI: no visible binding for global variable 'mat.normalise'
  loadGUI: no visible binding for '<<-' assignment to 'mat.rebuilt'
  loadGUI: no visible binding for global variable 'mat8'
  loadGUI: no visible binding for global variable 'mat.rebuilt'
  loadGUI: no visible binding for '<<-' assignment to 'mat.binary'
  loadGUI: no visible binding for global variable 'mat9'
  loadGUI: no visible binding for global variable 'mat.binary'
  make.peakGUI: no visible binding for '<<-' assignment to 'mat.rebuilt'
  make.peakGUI: no visible binding for global variable 'mat.analyse'
  make.peakGUI: no visible binding for global variable 'mat.rebuilt'
  make.peakGUI: no visible binding for global variable 'mat.raw'
  make.peakGUI : compute.peak.modification: no visible binding for global
  variable 'mat.normalise'
  make.peakGUI : compute.peak.modification: no visible binding for '<<-'
  assignment to 'sel'
  make.peakGUI : compute.peak.modification: no visible binding for '<<-'
  assignment to 'ss'
  make.peakGUI : save.peak: no visible binding for global variable 'sel'
  make.peakGUI : save.peak: no visible binding for global variable 'ss'
  make.peakGUI : save.peak: no visible binding for global variable
  'mat.raw'
  make.peakGUI : save.peak: no visible binding for '<<-' assignment to
  'mat.analyse'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.raw.1'
  mergeGUI : load.project: no visible binding for global variable
  'mat.raw'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.align.1'
  mergeGUI : load.project: no visible binding for global variable
  'mat.align'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'rxref1'
  mergeGUI : load.project: no visible binding for global variable 'rxref'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'fact1'
  mergeGUI : load.project: no visible binding for global variable 'fact'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'param1'
  mergeGUI : load.project: no visible binding for global variable 'param'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'div1'
  mergeGUI : load.project: no visible binding for global variable 'div'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'alig1'
  mergeGUI : load.project: no visible binding for global variable 'alig'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.raw.2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.align.2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'rxref2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'fact2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'param2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'div2'
  mergeGUI : load.project: no visible binding for '<<-' assignment to
  'alig2'
  mergeGUI : merge: no visible binding for global variable 'rxref2'
  mergeGUI : merge: no visible binding for global variable 'rxref1'
  mergeGUI : merge: no visible binding for global variable 'fact1'
  mergeGUI : merge: no visible binding for global variable 'fact2'
  mergeGUI : merge: no visible binding for global variable 'param1'
  mergeGUI : merge: no visible binding for global variable 'param2'
  mergeGUI : merge: no visible binding for global variable 'mat.raw.1'
  mergeGUI : merge: no visible binding for global variable 'mat.raw.2'
  mergeGUI : merge: no visible binding for global variable 'mat.align.1'
  mergeGUI : merge: no visible binding for global variable 'mat.align.2'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'mat.raw'
  mergeGUI : merge: no visible binding for global variable 'mat.raw'
  mergeGUI : merge: no visible binding for '<<-' assignment to
  'mat.align'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'rxref'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'fact'
  mergeGUI : merge: no visible binding for global variable 'fact'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'alig'
  mergeGUI : merge: no visible binding for global variable 'alig1'
  mergeGUI : merge: no visible binding for global variable 'alig2'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'param'
  mergeGUI : merge: no visible binding for '<<-' assignment to 'div'
  mergeGUI : merge: no visible binding for global variable 'div1'
  mergeGUI : merge: no visible binding for global variable 'div2'
  mergeGUI : merge: no visible binding for global variable 'mat.align'
  mergeGUI : merge: no visible binding for '<<-' assignment to
  'mat.analyse'
  normalisationGUI: no visible binding for global variable 'mat.baseline'
  normalisationGUI: no visible binding for global variable 'mat.range'
  normalisationGUI : compute.normalisation: no visible binding for global
  variable 'mat.range'
  normalisationGUI : compute.normalisation: no visible binding for '<<-'
  assignment to 'mat.analyse'
  normalisationGUI : compute.normalisation: no visible binding for '<<-'
  assignment to 'mat.normalise'
  pcaGUI : scree.plot: no visible binding for global variable
  'mat.analyse'
  pcaGUI : compute.pca: no visible binding for global variable
  'mat.analyse'
  pcaGUI : compute.pca: no visible binding for '<<-' assignment to 'pcaf'
  pcaGUI : compute.pca: no visible binding for '<<-' assignment to
  'fact_temp'
  pcaGUI : compute.pca: no visible binding for global variable 'fact'
  pcaGUI : compute.pca: no visible binding for '<<-' assignment to
  'param_temp'
  pcaGUI : compute.pca: no visible binding for global variable 'param'
  pcaGUI : save.pca: no visible binding for global variable 'pcaf'
  pcaGUI : save.pca: no visible binding for global variable 'fact_temp'
  pcaGUI : save.pca: no visible binding for global variable 'param_temp'
  permanovaGUI: no visible binding for global variable 'fact'
  permanovaGUI: no visible binding for '<<-' assignment to 'j'
  permanovaGUI : create.model: no visible binding for global variable 'j'
  permanovaGUI : create.model: no visible binding for '<<-' assignment to
  'j'
  permanovaGUI : create.model: no visible binding for global variable
  'fact'
  permanovaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
  permanovaGUI : compute.permanova: no visible binding for global
  variable 'ano2'
  permanovaGUI : compute.permanova: no visible binding for global
  variable 'fact'
  plot2dGUI: no visible binding for global variable 'mat.raw'
  plot2dGUI : plot2d: no visible binding for global variable
  'mat.analyse'
  plot2dGUI : plot2d: no visible binding for global variable 'mat.raw'
  plot3dim: no visible binding for global variable 'myp'
  plot3dimGUI: no visible binding for '<<-' assignment to 'colorlut'
  plot3dimGUI: no visible binding for global variable 'mat.analyse'
  plot3dimGUI: no visible binding for '<<-' assignment to 'myp'
  plot3dimGUI : plot3d: no visible binding for global variable
  'mat.analyse'
  plot3dimGUI : plot3d: no visible binding for global variable 'MainMenu'
  plotord3dGUI: no visible binding for global variable 'fact_temp'
  plotord3dGUI : plotord3d: no visible binding for global variable 'pcaf'
  plotord3dGUI : plotord3d: no visible binding for global variable
  'fact_temp'
  plotordGUI: no visible binding for global variable 'mat.analyse'
  plotordGUI: no visible binding for global variable 'param_temp'
  plotordGUI: no visible binding for global variable 'fact_temp'
  plotordGUI : plotord: no visible binding for global variable 'pcaf'
  plotordGUI : plotord: no visible binding for '<<-' assignment to 'colo'
  plotordGUI : plotord: no visible binding for global variable 'fact'
  plotordGUI : plotord: no visible binding for '<<-' assignment to 'pche'
  plotordGUI : plotord : zz: no visible binding for '<<-' assignment to
  'pche'
  plotordGUI : plotord: no visible binding for global variable 'colo'
  plotordGUI : plotord: no visible binding for global variable 'pche'
  pwanosimGUI: no visible binding for global variable 'fact'
  pwanosimGUI : pwanosimGUI1: no visible binding for global variable
  'fact'
  pwanosimGUI : pwanosimGUI1: no visible binding for global variable 'ae'
  pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'mat.binary'
  pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'fact'
  pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'ae'
  pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'mat.analyse'
  pwanosimGUI : load.pwanosim: no visible binding for '<<-' assignment to
  'ae'
  rdaGUI: no visible binding for global variable 'param'
  rdaGUI: no visible binding for global variable 'div'
  rdaGUI: no visible binding for global variable 'mat.analyse'
  rdaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na'
  rdaGUI: no visible binding for '<<-' assignment to 'j'
  rdaGUI : create.model: no visible binding for global variable 'j'
  rdaGUI : create.model: no visible binding for '<<-' assignment to 'j'
  rdaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
  rdaGUI : compute.rda: no visible binding for global variable 'ano2'
  rdaGUI : stepwise.rda: no visible binding for global variable 'ano2'
  rdaGUI : partial.rda: no visible binding for global variable 'ano2'
  rdaGUI : plot.rda: no visible binding for global variable 'ano2'
  roxdefault: no visible binding for '<<-' assignment to 'rxref'
  roxdefault: no visible binding for global variable 'rxref'
  roxdefault: no visible binding for global variable 'MainMenu'
  roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to
  'roxref'
  roxnewGUI : define.new.rox : defroxref: no visible binding for global
  variable 'MainMenu'
  roxnewGUI : define.new.rox: no visible binding for global variable
  'roxref'
  roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to
  'rxref'
  roxnewGUI : define.new.rox: no visible binding for global variable
  'rxref'
  roxnewGUI : help.define.new.rox: no visible binding for global variable
  'mat.raw'
  saveasGUI: no visible binding for global variable 'MainMenu'
  simperGUI: no visible binding for global variable 'fact'
  simperGUI : load.simper: no visible binding for '<<-' assignment to
  'ae'
  simperGUI1: no visible binding for global variable 'fact'
  simperGUI1: no visible binding for global variable 'ae'
  simperGUI1 : compute.simper: no visible binding for global variable
  'fact'
  simperGUI1 : compute.simper: no visible binding for global variable
  'ae'
  simperGUI1 : compute.simper: no visible binding for global variable
  'mat.analyse'
  simperGUI1 : compute.simper: no visible binding for '<<-' assignment to
  'simper.data'
  simperGUI1 : export.simper: no visible binding for global variable
  'simper.data'
  trunckGUI: no visible binding for global variable 'mat.align'
  trunckGUI: no visible binding for global variable 'mat.baseline'
  trunckGUI : define.range: no visible binding for global variable
  'mat.baseline'
  waitGUI: no visible binding for '<<-' assignment to 'z'
  waitGUI: no visible binding for global variable 'z'
  withingroupvariability: no visible binding for global variable 'fact'
  withingroupvariability: no visible binding for global variable 'sel'
  withingroupvariabilityGUI: no visible binding for global variable
  'fact'
  withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'mat.binary'
  withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'mat.analyse'
  withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'fact'
  Found possibly global 'T' or 'F' in the following functions:
  StatFingerprints best.nmds diversitiesGUI graphfactGUI roxnewGUI
  simperGUI1
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking examples ... OK
• checking PDF version of manual ... OK