• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'SNPassoc/DESCRIPTION' ... OK
• this is package 'SNPassoc' version '1.6-0'
• package encoding: latin1
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'SNPassoc' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: LD.Rd:69-71: Dropping empty section \examples
  prepare_Rd: plotWGassociation.Rd:64-66: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... ERROR
  Running examples in 'SNPassoc-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * GenomicControl
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: GenomicControl
  > ### Title: Population substructure
  > ### Aliases: GenomicControl
  > ### Keywords: utilities
  >
  > ### ** Examples
  >
  >
  > data(SNPs)
  > datSNP<-setupSNP(SNPs,6:40,sep="")
  > res<-scanWGassociation(casco,datSNP,model=c("do","re","log-add"))
  Be patient. The program is computing ...
  The program took 0.01 seconds
  >
  > # Genomic Control
  > resCorrected<-GenomicControl(res)
  
  lambda:
  dominant recessive log-additive
  NA NA 0.1219302
  > plot(resCorrected)
  Error in xy.coords(x, y, xlabel, ylabel, log) :
  'x' and 'y' lengths differ
  Calls: plot ... plot.WGassociation -> plot -> plot.default -> xy.coords
  Execution halted