• using R version 2.11.0 (2010-04-22)
• using session charset: ISO8859-1
• checking for file 'PresenceAbsence/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'PresenceAbsence' version '1.1.4'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'PresenceAbsence' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: Kappa.Rd:29-30: Dropping empty section \note
  prepare_Rd: Kappa.Rd:27: Dropping empty section \references
  prepare_Rd: PresenceAbsence.package.Rd:54: Dropping empty section \seealso
  prepare_Rd: auc.Rd:46-47: Dropping empty section \note
  prepare_Rd: auc.roc.plot.Rd:74-75: Dropping empty section \note
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  prepare_Rd: predicted.prevalence.Rd:36: Dropping empty section \seealso
  prepare_Rd: presence.absence.accuracy.Rd:63-64: Dropping empty section \note
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  prepare_Rd: specificity.Rd:28-29: Dropping empty section \note
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• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
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• checking examples ... OK
• checking PDF version of manual ... OK