• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'Design/DESCRIPTION' ... OK
• this is package 'Design' version '2.3-0'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'Design' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Design: possible error in eval(as.name(XDATADIST), local = FALSE):
  unused argument(s) (local = FALSE)
  Getlim: possible error in eval(as.name(XDATADIST), local = FALSE):
  unused argument(s) (local = FALSE)
  Mean.cph: multiple local function definitions for 'f' with different
  formal arguments
  bj: no visible binding for global variable 'glm.links'
  bootcov: no visible global function definition for 'origGlmFamily'
  bootcov: no visible global function definition for 'RqFit'
  calibrate.cph: no visible binding for global variable 'pred.obs'
  calibrate.default: no visible binding for global variable '.orig.cal'
  calibrate.psm: no visible binding for global variable
  'survReg.distributions'
  calibrate.psm: no visible binding for global variable 'glm.links'
  calibrate.psm: no visible binding for global variable 'pred.obs'
  cph: possible error in eval(yy, data = data): unused argument(s) (data
  = data)
  datadist: possible error in eval(as.name(nm), local = FALSE): unused
  argument(s) (local = FALSE)
  datadist: no visible global function definition for 'database.object'
  gendata.Design: no visible global function definition for 'using.X'
  gendata.Design: no visible global function definition for 'ed'
  gendata.Design: possible error in assign(".df.sub.", df.sub, where =
  1): unused argument(s) (where = 1)
  gendata.Design: no visible global function definition for 'Edit.data'
  gendata.Design: no visible binding for global variable '.df.sub.'
  gendata.Design: possible error in get(".df.sub.", where = 1): unused
  argument(s) (where = 1)
  gendata.Design: no visible global function definition for 'data.ed'
  gendata.default: no visible binding for global variable 'obj'
  glsD: no visible binding for global variable 'aNlm'
  glsD: no visible global function definition for 'glsApVar'
  latex.pphsm: no visible binding for global variable 'f'
  lrm: no visible binding for global variable 'response'
  lrm: possible error in lrm.fit.strat(X, Y, Strata, offset = offs,
  penalty.matrix = penalty.matrix, strata.penalty = strata.penalty, tol
  = tol, weights = weights, normwt = normwt, ...): unused argument(s)
  (weights = weights, normwt = normwt)
  lrm: possible error in lrm.fit.strat(X, Y, Strata, penalty.matrix =
  penalty.matrix, strata.penalty = strata.penalty, tol = tol, weights =
  weights, normwt = normwt, ...): unused argument(s) (weights =
  weights, normwt = normwt)
  oldDesignFit2R: no visible binding for global variable
  'linear.predictors'
  oldDesignFit2R: no visible binding for global variable 'stats'
  oldDesignFit2R: no visible binding for global variable 'freq'
  ols: no visible binding for global variable 'response'
  ols.influence: no visible global function definition for 'left.solve'
  pentrace: no visible global function definition for 'nlminb.control'
  print.lrm: no visible binding for global variable 'est.exp'
  print.psm: no visible binding for global variable
  'survReg.distributions'
  print.psm: no visible global function definition for 'summary.survReg'
  print.psm: no visible global function definition for
  'print.summary.survreg'
  psm: no visible global function definition for 'survReg.control'
  psm: no visible binding for global variable 'survReg.distributions'
  psm: no visible global function definition for 'survpenal.fit'
  psm: no visible global function definition for 'survReg.fit'
  residuals.psm: no visible global function definition for
  'residuals.survReg'
  residuals.psm: no visible global function definition for
  'residuals.survreg'
  survest.psm: no visible binding for global variable
  'survReg.distributions'
  survest.psm: no visible binding for global variable 'glm.links'
  survplot.Design: no visible global function definition for 'oldCut'
  survreg.fit2: no visible binding for global variable
  'survReg.distributions'
  survreg.fit2: no visible global function definition for 'survReg.fit'
  survreg.fit2: no visible global function definition for
  'survReg.control'
  val.prob: possible error in legend(lp, leg, lty = lt, marks = marks,
  mkh = mkh, cex = cex, bty = "n"): unused argument(s) (marks = marks,
  mkh = mkh)
  val.prob: no visible global function definition for 'oldCut'
  val.surv: no visible binding for global variable
  'survReg.distributions'
  val.surv: no visible binding for global variable 'glm.links'
  validate.psm: no visible binding for global variable 'inverse'
  validate.tree: no visible binding for global variable 'response'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... WARNING
  Argument items with no description in Rd object 'Design.trans':
  x1
  
  Argument items with no description in Rd object 'bj':
  data subset B bw rule sls aics pr tol rel.tolerance
  
  Argument items with no description in Rd object 'calibrate':
  method B bw rule type sls xlim
  
  Argument items with no description in Rd object 'glmD':
  formula family data weights subset na.action start offset control
  model method x y
  
  Argument items with no description in Rd object 'latex.cph':
  file which varnames columns inline before dec
  
  Argument items with no description in Rd object 'nomogram':
  x
  
  Argument items with no description in Rd object 'plot.Design':
  theta phi
  
  Argument items with no description in Rd object 'psm':
  data subset weights dist scale init na.action
  
  Argument items with no description in Rd object 'survfit.cph':
  newdata se.fit conf.int individual type vartype
  
  Argument items with no description in Rd object 'survfit.formula':
  conf.type
  
  Argument items with no description in Rd object 'validate.cph':
  rel.tolerance maxiter tol
  
  Argument items with no description in Rd object 'validate.lrm':
  method B bw rule type sls aics
  
  Argument items with no description in Rd object 'validate.ols':
  method B bw rule type sls aics
  
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking PDF version of manual ... OK