• using R version 2.7.2 RC (2008-08-18 r46382)
• using session charset: ISO8859-1
• checking for file 'arrayMissPattern/DESCRIPTION' ... OK
• this is package 'arrayMissPattern' version '1.3'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'arrayMissPattern' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... WARNING
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3332): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  options(warn=1,warnEscapes=FALSE);tools:::.check_packages_used(package="arrayMissPattern")
  See the information on DESCRIPTION files in the chapter 'Creating R
  packages' of the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... WARNING
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1836): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  tools::checkS3methods(package = "arrayMissPattern")
  See section 'Generic functions and methods' of the 'Writing R Extensions'
  manual.
• checking replacement functions ... WARNING
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:2652): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  tools::checkReplaceFuns(package = "arrayMissPattern")
  In R, the argument of a replacement function which corresponds to the right
  hand side must be named 'value'.
• checking foreign function calls ... WARNING
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1144): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  tools::checkFF(package = "arrayMissPattern")
  See the chapter 'System and foreign language interfaces' of the 'Writing R
  Extensions' manual.
• checking R code for possible problems ... NOTE
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1552): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  tools:::.check_code_usage_in_package(package = "arrayMissPattern")
  arrayMissPattern: no visible binding for '<<-' assignment to
  'Result.Save'
  arrayMissPattern: no visible binding for '<<-' assignment to
  'high.list'
  arrayMissPattern: no visible binding for '<<-' assignment to
  'high.chip.list'
  arrayMissPattern: no visible binding for '<<-' assignment to
  'gene.location'
  arrayMissPattern: no visible binding for '<<-' assignment to
  'true.flag'
  arrayMissPattern : geneListSelectRow.handler: no visible binding for
  '<<-' assignment to 'high.list'
  arrayMissPattern : geneListSelectRow.handler: no visible binding for
  global variable 'high.list'
  arrayMissPattern : geneListUnselectRow.handler: no visible binding for
  '<<-' assignment to 'high.list'
  arrayMissPattern : geneListUnselectRow.handler: no visible binding for
  global variable 'high.list'
  arrayMissPattern : chipListSelectRow.handler: no visible binding for
  '<<-' assignment to 'high.chip.list'
  arrayMissPattern : chipListSelectRow.handler: no visible binding for
  global variable 'high.chip.list'
  arrayMissPattern : chipListUnselectRow.handler: no visible binding for
  '<<-' assignment to 'high.chip.list'
  arrayMissPattern : chipListUnselectRow.handler: no visible binding for
  global variable 'high.chip.list'
  arrayMissPattern : showMissingList: no visible binding for global
  variable 'geneList'
  arrayMissPattern : showChipList: no visible binding for '<<-'
  assignment to 'chip.name'
  arrayMissPattern : showChipList: no visible binding for global variable
  'data.missing'
  arrayMissPattern : showChipList: no visible binding for global variable
  'chip.name'
  arrayMissPattern : showChipList: no visible binding for global variable
  'ChipList'
  arrayMissPattern : removeMissingList: no visible binding for global
  variable 'geneList'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'data.missing'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'exp.info.name'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for global variable 'data.missing'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'missing.pattern'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for global variable 'exp.info.name'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for global variable 'new.text'
  arrayMissPattern : Mnu.read.file.handler : <anonymous>: no visible
  binding for global variable 'outputText'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'gene.location'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'exp.info.name'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for global variable 'gene.location'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for '<<-' assignment to 'y'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for global variable 'exp.info.name'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for global variable 'new.text'
  arrayMissPattern : Mnu.read.grid.file.handler : <anonymous>: no visible
  binding for global variable 'outputText'
  arrayMissPattern : Mnu.read.block.file.handler : <anonymous>: no
  visible binding for '<<-' assignment to 'gene.block'
  arrayMissPattern : Mnu.read.block.file.handler : <anonymous>: no
  visible binding for '<<-' assignment to 'exp.info.name'
  arrayMissPattern : Mnu.read.block.file.handler : <anonymous>: no
  visible binding for global variable 'exp.info.name'
  arrayMissPattern : Mnu.read.block.file.handler : <anonymous>: no
  visible binding for global variable 'new.text'
  arrayMissPattern : Mnu.read.block.file.handler : <anonymous>: no
  visible binding for global variable 'outputText'
  arrayMissPattern : Mnu.exit.handler: no visible binding for global
  variable 'main'
  arrayMissPattern : missing.indicator: no visible binding for '<<-'
  assignment to 'missing.I'
  arrayMissPattern : missing.indicator: no visible binding for '<<-'
  assignment to 'missing.Name'
  arrayMissPattern : missing.indicator: no visible binding for global
  variable 'missing.Name'
  arrayMissPattern : missing.indicator: no visible binding for global
  variable 'missing.I'
  arrayMissPattern : missing.indicator: no visible binding for '<<-'
  assignment to 'missing.Name.temp'
  arrayMissPattern : missing.indicator: no visible binding for '<<-'
  assignment to 'miss.temp'
  arrayMissPattern : Mnu.Missing.rates.chip.handler: no visible binding
  for global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.rates.gene.handler: no visible binding
  for global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.rates.block.handler: no visible binding
  for global variable 'gene.block'
  arrayMissPattern : Mnu.Missing.rates.block.handler: no visible binding
  for global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.pattern1.handler: no visible binding for
  global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'gene.block'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'missing.pattern'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'x'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'y'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.pattern2.handler: no visible binding for
  global variable 'gene.location'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'high.chip.list'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'gene.block'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'gene.location'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'data.missing'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'x'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'y'
  arrayMissPattern : Mnu.Missing.pattern.chip.handler: no visible binding
  for global variable 'chip.name'
  arrayMissPattern : Mnu.Missing.pattern.intensity.handler: no visible
  binding for global variable 'data.missing'
  arrayMissPattern : Mnu.Ripley.K.handler: no visible binding for global
  variable 'data.missing'
  arrayMissPattern : Mnu.Ripley.K.handler: no visible binding for global
  variable 'gene.location'
  arrayMissPattern : Mnu.Ripley.K.handler: no visible binding for global
  variable 'chip.name'
  arrayMissPattern : Mnu.Ripley.K.handler: no visible binding for global
  variable 'new.text'
  arrayMissPattern : Mnu.Ripley.K.handler: no visible binding for global
  variable 'outputText'
  arrayMissPattern: no visible binding for '<<-' assignment to 'main'
  arrayMissPattern: no visible binding for global variable 'main'
  arrayMissPattern: no visible binding for '<<-' assignment to 'ChipList'
  arrayMissPattern: no visible binding for global variable 'ChipList'
  arrayMissPattern: no visible binding for '<<-' assignment to
  'outputText'
  arrayMissPattern: no visible binding for global variable 'outputText'
  arrayMissPattern: no visible binding for '<<-' assignment to 'new.text'
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3004): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  tools:::.check_T_and_F(package = "arrayMissPattern")
  Found possibly global 'T' or 'F' in the following function:
  arrayMissPattern
• checking Rd files ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... WARNING
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1064): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  tools::undoc(package = "arrayMissPattern")
  All user-level objects in a package should have documentation entries.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking for code/documentation mismatches ... WARNING
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  tools::codoc(package = "arrayMissPattern")
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:220): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  tools::codocClasses(package = "arrayMissPattern")
• checking Rd \usage sections ... NOTE
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
  
  (Rterm.exe:3448): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
  tools::checkDocStyle(package = "arrayMissPattern")
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• creating arrayMissPattern-Ex.R ... OK
• checking examples ... WARNING
  Found the following significant warnings:
  Warning: 'gtkCListNew' is deprecated.
  Warning: 'method' is deprecated.
  Warning: 'method' is deprecated.
  Deprecated functions may be defunct as soon as of the next release of R.
  See ?Deprecated.
• creating arrayMissPattern-manual.tex ... OK
• checking arrayMissPattern-manual.tex using pdflatex ... OK