• using R version 2.8.0 alpha (2008-09-26 r46576)
• using session charset: ISO8859-1
• checking for file 'VGAM/DESCRIPTION' ... OK
• this is package 'VGAM' version '0.7-7'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'VGAM' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... WARNING
  Warning in get_S4_generics_with_methods(code_env) :
  Generics g in env = <environment: namespace:VGAM> where hasMethods(g, env) errors: 'coef', 'logLik', 'plot', 'vcov'
  May need something like
  
  importFrom("stats", "coef")
  importFrom("stats", "logLik")
  importFrom("graphics", "plot")
  importFrom("stats", "vcov")
  
  in NAMESPACE.
  See the information on DESCRIPTION files in the chapter 'Creating R
  packages' of the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... WARNING
  Warning in get_S4_generics_with_methods(code_env) :
  Generics g in env = <environment: namespace:VGAM> where hasMethods(g, env) errors: 'coef', 'logLik', 'plot', 'vcov'
  May need something like
  
  importFrom("stats", "coef")
  importFrom("stats", "logLik")
  importFrom("graphics", "plot")
  importFrom("stats", "vcov")
  
  in NAMESPACE.
  In R, the argument of a replacement function which corresponds to the right
  hand side must be named 'value'.
• checking foreign function calls ... WARNING
  Warning in get_S4_generics_with_methods(code_env) :
  Generics g in env = <environment: namespace:VGAM> where hasMethods(g, env) errors: 'coef', 'logLik', 'plot', 'vcov'
  May need something like
  
  importFrom("stats", "coef")
  importFrom("stats", "logLik")
  importFrom("graphics", "plot")
  importFrom("stats", "vcov")
  
  in NAMESPACE.
  See the chapter 'System and foreign language interfaces' of the 'Writing R
  Extensions' manual.
• checking R code for possible problems ... NOTE
  Coef.qrrvglm: no visible binding for global variable 'optimum'
  Coef.qrrvglm: no visible binding for global variable 'Darray'
  Coef.qrrvglm: no visible binding for global variable 'Tolerance'
  callcaof: no visible binding for '<<-' assignment to
  '.VGAM.CAO.cmatrix'
  callcqof: no visible binding for '<<-' assignment to
  '.VGAM.CQO.cmatrix'
  callcqof: no visible binding for '<<-' assignment to
  '.VGAM.CQO.ocmatrix'
  calldcaof: no visible binding for global variable '.VGAM.CAO.etamat'
  calldcaof: no visible binding for global variable '.VGAM.CAO.beta'
  calldcaof: no visible binding for global variable 'p1'
  calldcaof: no visible binding for global variable 'U'
  calldcaof: no visible binding for global variable 'queue'
  calldcaof: no visible binding for global variable 'qbig'
  calldcaof: no visible binding for global variable 'spar2'
  calldcaof: no visible binding for global variable 'df2.nl'
  calldcaof: no visible binding for '<<-' assignment to
  '.VGAM.CAO.etamat'
  calldcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.z'
  calldcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.U'
  cao.fit: no visible binding for global variable 'maxitl'
  cao.fit: no visible binding for global variable 'fv'
  cqo.fit: no visible binding for global variable 'modelno'
  cqo.fit: no visible binding for global variable 'quasi.newton'
  cqo.fit: no visible binding for global variable 'NOS'
  cqo.fit: no visible binding for global variable 'z'
  cqo.fit: no visible binding for global variable 'fv'
  loglinb3 : <anonymous>: no visible binding for global variable 'u3'
  loglinb3 : <anonymous>: no visible binding for global variable 'u2'
  loglinb3 : <anonymous>: no visible binding for global variable 'u23'
  loglinb3 : <anonymous>: no visible binding for global variable 'u1'
  loglinb3 : <anonymous>: no visible binding for global variable 'u13'
  loglinb3 : <anonymous>: no visible binding for global variable 'u12'
  loglinb3 : <anonymous>: no visible binding for global variable 'denom'
  mbino: no visible binding for global variable 'mvar'
  mbino: no visible binding for global variable 'smallno'
  preplotvgam: no visible global function definition for 'v.labels.lm'
  preplotvgam: no visible global function definition for 'terms.inner'
  rrr.derivC.rss: no visible binding for '<<-' assignment to
  '.VGAM.dot.counter'
  rrr.derivC.rss: no visible binding for global variable
  '.VGAM.dot.counter'
  rrvglm.fit: no visible binding for global variable 'modelno'
  rrvglm.fit: no visible binding for global variable 'fv'
  rrvglm.fit: no visible binding for global variable 'one.more'
  rrvglm.fit: no visible binding for global variable 'rrr.expression'
  uqo.fit: no visible binding for global variable 'CQO.FastAlgorithm'
  vgam: no visible binding for global variable 'Y'
  vgam.fit: no visible binding for global variable 'fv'
  vglm: no visible binding for global variable 'Y'
  vglm.fit: no visible binding for global variable 'fv'
  vlm.wfit: no visible global function definition for 'lm.fit.qr'
• checking Rd files ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• creating VGAM-Ex.R ... OK
• checking examples ...