• using R version 2.7.1 beta (2008-06-13 r45923)
  • using session charset: ISO8859-1
  • checking for file 'Design/DESCRIPTION' ... OK
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  • this is package 'Design' version '2.1-1'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'Design' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... WARNING
    Foreign function calls without 'PACKAGE' argument:
    .Fortran("avia", ...)
    .Fortran("avia", ...)
    .Fortran("lrmfit", ...)
    .Fortran("lrmfit", ...)
    .Fortran("lrmfit", ...)
    .Fortran("lrmfit", ...)
    .Fortran("matinv", ...)
    .Fortran("robcovf", ...)
    .C("S_agsurv2", ...)
    .C("S_agsurv2", ...)
    See the chapter 'System and foreign language interfaces' of the 'Writing R
    Extensions' manual.
  • checking R code for possible problems ... NOTE
    Design: possible error in eval(as.name(XDATADIST), local = FALSE):
    unused argument(s) (local = FALSE)
    Getlim: possible error in eval(as.name(XDATADIST), local = FALSE):
    unused argument(s) (local = FALSE)
    Legend.plot.Design: no visible global function definition for 'subplot'
    Mean.cph: multiple local function definitions for 'f' with different
    formal arguments
    bj: no visible binding for global variable 'glm.links'
    bootcov: no visible global function definition for 'origGlmFamily'
    calibrate.cph: no visible binding for global variable 'pred.obs'
    calibrate.default: no visible binding for global variable '.orig.cal'
    calibrate.psm: no visible binding for global variable
    'survReg.distributions'
    calibrate.psm: no visible binding for global variable 'glm.links'
    calibrate.psm: no visible binding for global variable 'pred.obs'
    cph: possible error in eval(yy, data = data): unused argument(s) (data
    = data)
    cph: no visible global function definition for 'residuals.coxph'
    datadist: possible error in eval(as.name(nm), local = FALSE): unused
    argument(s) (local = FALSE)
    datadist: no visible global function definition for 'database.object'
    gendata.Design: no visible global function definition for 'using.X'
    gendata.Design: no visible global function definition for 'ed'
    gendata.Design: possible error in assign(".df.sub.", df.sub, where =
    1): unused argument(s) (where = 1)
    gendata.Design: no visible global function definition for 'Edit.data'
    gendata.Design: no visible binding for global variable '.df.sub.'
    gendata.Design: possible error in get(".df.sub.", where = 1): unused
    argument(s) (where = 1)
    gendata.Design: no visible global function definition for 'data.ed'
    gendata.default: no visible binding for global variable 'obj'
    glsD: no visible binding for global variable 'aNlm'
    glsD: no visible global function definition for 'glsApVar'
    latex.pphsm: no visible binding for global variable 'f'
    lrm: no visible binding for global variable 'response'
    lrm: possible error in lrm.fit.strat(X, Y, Strata, offset = offs,
    penalty.matrix = penalty.matrix, strata.penalty = strata.penalty, tol
    = tol, weights = weights, normwt = normwt, ...): unused argument(s)
    (weights = weights, normwt = normwt)
    lrm: possible error in lrm.fit.strat(X, Y, Strata, penalty.matrix =
    penalty.matrix, strata.penalty = strata.penalty, tol = tol, weights =
    weights, normwt = normwt, ...): unused argument(s) (weights =
    weights, normwt = normwt)
    oldDesignFit2R: no visible binding for global variable
    'linear.predictors'
    oldDesignFit2R: no visible binding for global variable 'stats'
    oldDesignFit2R: no visible binding for global variable 'freq'
    ols: no visible binding for global variable 'response'
    ols.influence: no visible global function definition for 'left.solve'
    pentrace: no visible global function definition for 'nlminb.control'
    print.lrm: no visible binding for global variable 'est.exp'
    print.psm: no visible binding for global variable
    'survReg.distributions'
    print.psm: no visible global function definition for 'summary.survReg'
    print.psm: no visible global function definition for
    'print.summary.survreg'
    psm: no visible global function definition for 'survReg.control'
    psm: no visible binding for global variable 'survReg.distributions'
    psm: no visible global function definition for 'survpenal.fit'
    psm: no visible global function definition for 'survReg.fit'
    residuals.psm: no visible global function definition for
    'residuals.survReg'
    residuals.psm: no visible global function definition for
    'residuals.survreg'
    summary.survfit: no visible global function definition for
    'print.survfit.computations'
    survest.psm: no visible binding for global variable
    'survReg.distributions'
    survest.psm: no visible binding for global variable 'glm.links'
    survfit: no visible binding for global variable 'response'
    survplot.Design: no visible global function definition for 'oldCut'
    survreg.fit2: no visible binding for global variable
    'survReg.distributions'
    survreg.fit2: no visible global function definition for 'survReg.fit'
    survreg.fit2: no visible global function definition for
    'survReg.control'
    val.prob: possible error in legend(lp, leg, lty = lt, marks = marks,
    mkh = mkh, cex = cex, bty = "n"): unused argument(s) (marks = marks,
    mkh = mkh)
    val.prob: no visible global function definition for 'oldCut'
    val.surv: no visible binding for global variable
    'survReg.distributions'
    val.surv: no visible binding for global variable 'glm.links'
    validate.psm: no visible binding for global variable 'inverse'
    validate.tree: no visible binding for global variable 'prune.tree'
    validate.tree: no visible binding for global variable 'response'
    validate.tree: no visible global function definition for 'tree'
  • checking Rd files ... OK
    •
  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • checking line endings in C/C++/Fortran sources/headers ... OK
    •
  • checking line endings in Makefiles ... OK
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  • checking for portable use of $BLAS_LIBS ... OK
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  • creating Design-Ex.R ... OK
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  • checking examples ... OK
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  • creating Design-manual.tex ... OK
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  • checking Design-manual.tex using pdflatex ... OK
    •