- using R version 2.11.1 Patched (2010-07-29 r52657)
- using session charset: ISO8859-1
- checking for file 'latentnet/DESCRIPTION' ... OK
- this is package 'latentnet' version '2.4-0'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'latentnet' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... ERROR
Running examples in 'latentnet-Ex.R' failed.
The error most likely occurred in:
> ### * ergmm
>
> flush(stderr()); flush(stdout())
>
> ### Name: ergmm
> ### Title: Fit a Latent Space Random Graph Model
> ### Aliases: ergmm latent latentcluster
> ### Keywords: graphs
>
> ### ** Examples
>
>
> #
> # Use 'data(package = "latentnet")' to list the data sets in a
> #
> data(package="latentnet")
Data sets in package 'latentnet':
davis Southern Women Data Set (Davis) as a bipartite
"network" object
samplike (sampson) Cumulative network of positive affection within
a monastery as a "network" object
tribes Read Highland Tribes
> #
> # Using Sampson's Monk data, lets fit a
> # simple latent position model
> #
> data(sampson)
> samp.fit <- ergmm(samplike ~ euclidean(d=2))
> #
> # See if we have convergence in the MCMC
> mcmc.diagnostics(samp.fit)
Chain 1
Lag 0
lpY beta.1 Z.1.1 Z.1.2
lpY 1.0000000 0.4632868 0.1897052 0.1427738
beta.1 0.4632868 1.0000000 0.3262412 0.1592792
Z.1.1 0.1897052 0.3262412 1.0000000 -0.1780107
Z.1.2 0.1427738 0.1592792 -0.1780107 1.0000000
Lag 10
lpY beta.1 Z.1.1 Z.1.2
lpY 0.26720411 0.24172154 0.08711498 0.08783128
beta.1 0.21902812 0.26472835 0.10032035 0.05721476
Z.1.1 0.07334797 0.07649308 0.35146716 -0.12626515
Z.1.2 0.11046670 0.10250387 -0.09231550 0.47411110
[[1]]
Quantile (q) = 0.025
Accuracy (r) = +/- 0.0125
Probability (s) = 0.95
Burn-in Total Lower bound Dependence
(M) (N) (Nmin) factor (I)
lpY 30 6610 600 11.0
beta.1 20 6330 600 10.6
Z.1.1 40 7720 600 12.9
Z.1.2 50 9240 600 15.4
> #
> # Plot the fit
> #
> plot(samp.fit)
Error: object 'e.curv.as.mult' not found
Execution halted