• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'hddplot/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'hddplot' version '0.52'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'hddplot' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  accTrainTest: no visible binding for global variable 'Golub.BM'
  accTrainTest: no visible binding for global variable 'cancer.BM'
  accTrainTest: no visible binding for global variable 'gp.id'
  aovFbyrow: no visible binding for global variable 'Golub'
  aovFbyrow: no visible binding for global variable 'golub.info'
  cvdisc: no visible binding for global variable 'GolubB'
  cvdisc: no visible binding for global variable 'tissue.mfB'
  cvscores: no visible binding for global variable 'BMonly.cv'
  cvscores: no visible binding for global variable 'Golub.PBf'
  defectiveCVdisc: no visible binding for global variable 'GolubB'
  defectiveCVdisc: no visible binding for global variable 'tissue.mfB'
  plotTrainTest: no visible binding for global variable 'Golub.BM'
  plotTrainTest: no visible binding for global variable 'cancer.BM'
  scoreplot: no visible binding for global variable 'miniG.scores'
• checking Rd files ... NOTE
  prepare_Rd: accTrainTest.Rd:26-27: Dropping empty section \details
  prepare_Rd: accTrainTest.Rd:38-39: Dropping empty section \note
  prepare_Rd: accTrainTest.Rd:36: Dropping empty section \references
  prepare_Rd: accTrainTest.Rd:40: Dropping empty section \seealso
  prepare_Rd: aovFbyrow.Rd:25-26: Dropping empty section \note
  prepare_Rd: aovFbyrow.Rd:23: Dropping empty section \references
  prepare_Rd: cvdisc.Rd:53-54: Dropping empty section \note
  prepare_Rd: cvscores.Rd:28-29: Dropping empty section \details
  prepare_Rd: defectiveCVdisc.Rd:35-36: Dropping empty section \details
  prepare_Rd: defectiveCVdisc.Rd:46-47: Dropping empty section \note
  prepare_Rd: defectiveCVdisc.Rd:44: Dropping empty section \references
  prepare_Rd: divideUp.Rd:24-25: Dropping empty section \details
  prepare_Rd: divideUp.Rd:31-32: Dropping empty section \note
  prepare_Rd: divideUp.Rd:29: Dropping empty section \references
  prepare_Rd: pcp.Rd:33-34: Dropping empty section \details
  prepare_Rd: pcp.Rd:44-45: Dropping empty section \note
  prepare_Rd: pcp.Rd:42: Dropping empty section \references
  prepare_Rd: plotTrainTest.Rd:28-29: Dropping empty section \details
  prepare_Rd: plotTrainTest.Rd:35-36: Dropping empty section \note
  prepare_Rd: plotTrainTest.Rd:33: Dropping empty section \references
  prepare_Rd: plotTrainTest.Rd:37: Dropping empty section \seealso
  prepare_Rd: scoreplot.Rd:51: Dropping empty section \references
  prepare_Rd: simulateScores.Rd:25-26: Dropping empty section \details
  prepare_Rd: simulateScores.Rd:36-37: Dropping empty section \note
  prepare_Rd: simulateScores.Rd:34: Dropping empty section \references
  prepare_Rd: simulateScores.Rd:38: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK