- using R version 2.11.1 Patched (2010-07-29 r52657)
- using session charset: ISO8859-1
- checking for file 'dcemri/DESCRIPTION' ... OK
- this is package 'dcemri' version '0.10.5'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'dcemri' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
dcemri.bayes: no visible global function definition for 'mclapply'
dcemri.map: no visible global function definition for 'mclapply'
dcemri.spline: no visible global function definition for 'mclapply'
dcemri.spline.single: no visible global function definition for
'mclapply'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... WARNING
Argument items with no description in Rd object 'dcemri.bayes':
verbose tau.gamma tau.theta aif.model aif.parameter vp ...
Argument items with no description in Rd object 'dcemri.map':
verbose ... posterior parameter transform start hyper
Argument items with no description in Rd object 'dcemri.spline':
verbose user ab.hyper ab.tauepsilon p t0.compute samples k knots rw
nriters thin burnin D B A silent model.func model.guess ...
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... OK
- checking differences from 'dcemri-Ex.Rout' to 'dcemri-Ex.Rout.save' ...
1d0
< > options(pager = "console")
5,6c4,5
< > cleanEx()
< > nameEx("aif")
---
> > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
> > cleanEx(); nameEx("aif")
23a23,29
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
27c33
< 37.14839564 3.89505389 1.51615413 -0.01066077
---
> 37.14839724 3.89505419 1.51615437 -0.01066073
44,45c50,51
< [8,] 0.65000000 2.873297 3.326190
< [9,] 0.73333333 2.580520 3.006704
---
> [8,] 0.65000000 2.873297 3.326189
> [9,] 0.73333333 2.580520 3.006703
50,54c56
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("conv_fft")
---
> > cleanEx(); nameEx("conv_fft")
62a65
> >
88,92c91
< > cleanEx()
<
< detaching 'package:splines'
<
< > nameEx("dce_bayes")
---
> > cleanEx(); nameEx("dce_bayes")
116a116,122
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
164,168c170
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("dce_map")
---
> > cleanEx(); nameEx("dce_map")
209,210c211
< > cleanEx()
< > nameEx("dce_spline")
---
> > cleanEx(); nameEx("dce_spline")
232a234,240
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
262,266c270
< > cleanEx()
<
< detaching 'package:minpack.lm', 'package:splines'
<
< > nameEx("dcemri-package")
---
> > cleanEx(); nameEx("dcemri-package")
289,290c293
< > cleanEx()
< > nameEx("dcemri")
---
> > cleanEx(); nameEx("dcemri")
312a316,322
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
323,324c333,334
< [1,] 0.145599052 0.55271994
< [2,] 0.218344559 0.50276670
---
> [1,] 0.145599052 0.55271993
> [2,] 0.218344559 0.50276669
327,329c337,339
< [5,] 0.279725126 0.47523283
< [6,] 0.009912791 0.09056844
< [7,] 0.146992146 0.47381971
---
> [5,] 0.279725126 0.47523282
> [6,] 0.009912791 0.09056846
> [7,] 0.146992146 0.47381970
331,332c341,342
< [9,] 0.387767110 0.50434947
< [10,] 0.250521815 0.45796931
---
> [9,] 0.387767110 0.50434946
> [10,] 0.250521815 0.45796930
339,343c349
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("dwi")
---
> > cleanEx(); nameEx("dwi")
367a374,380
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
370c383
< 9.9858999848 0.0007337532
---
> 9.9858999893 0.0007337532
380,384c393
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("find_center")
---
> > cleanEx(); nameEx("find_center")
404,405c413
< > cleanEx()
< > nameEx("flipangle")
---
> > cleanEx(); nameEx("flipangle")
432a441,447
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
435c450
< 99.5197736 0.6534572
---
> 99.5197735 0.6534572
445,449c460
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("hotmetal")
---
> > cleanEx(); nameEx("hotmetal")
468,472c479
< > cleanEx()
<
< detaching 'package:splines'
<
< > nameEx("kineticmodel")
---
> > cleanEx(); nameEx("kineticmodel")
488a496,502
>
> This product includes software developed by the University of Chicago, as
> Operator of Argonne National Laboratory.
>
> See the LICENSE file distributed with the minpack.lm source code or
> http://www.netlib.org/minpack/disclaimer for the full license.
>
516,520c530
< > cleanEx()
<
< detaching 'package:minpack.lm'
<
< > nameEx("shift3D")
---
> > cleanEx(); nameEx("shift3D")
528a539
> >
541,542c552
< > cleanEx()
< > nameEx("tim_colors")
---
> > cleanEx(); nameEx("tim_colors")
561,565c571
< > cleanEx()
<
< detaching 'package:splines'
<
< > nameEx("write")
---
> > cleanEx(); nameEx("write")
OK
- checking package vignettes in 'inst/doc' ... OK
- checking PDF version of manual ... OK