• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'compositions/DESCRIPTION' ... OK
• this is package 'compositions' version '1.01-1'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'compositions' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... WARNING
  checkRd: (5) mvar.Rd:28: Tag \code is invalid in a \code block
• checking Rd metadata ... WARNING
  Rd files with duplicated name 'gsiinternal':
  gsiinternal.Rd gsiplotmargin.Rd
  Rd files with duplicated name 'plot3D':
  plot3d.Rd plot3dacomp.Rd plot3daplus.Rd
• checking Rd cross-references ... WARNING
  Missing link(s) in documentation object './man/arrows3d.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/axis3d.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/barplot.Rd':
  '[graphics]{barchart}'
  
  Missing link(s) in documentation object './man/cor.Rd':
  '[base]{cor}'
  
  Missing link(s) in documentation object './man/gsipairs.Rd':
  '[base]{pairs}'
  
  Missing link(s) in documentation object './man/gsitextpanel.Rd':
  '[base]{text}'
  
  Missing link(s) in documentation object './man/meanAcomp.Rd':
  '[robustbase]{covMCD}'
  
  Missing link(s) in documentation object './man/mvar.Rd':
  '[base]{var}' '[base]{cov}'
  
  Missing link(s) in documentation object './man/plot3d.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/plot3dacomp.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/plot3daplus.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/plot3drmult.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/plot3drplus.Rd':
  '[rgl]{points3D}'
  
  Missing link(s) in documentation object './man/varAcomp.Rd':
  '[base]{var}' '[base]{cov}'
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking tests ... OK
• checking PDF version of manual ... OK