• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'MSToolkit/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'MSToolkit' version '2.0'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'MSToolkit' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  analyzeData: no visible binding for global variable 'lsf.job.status'
  createContinuousCovariates: no visible binding for global variable
  'nSubjects'
  createDiscreteCovariates: no visible binding for global variable
  'nSubjects'
  createExternalCovariates: no visible binding for global variable
  'nSubjects'
  createExternalParameters: no visible binding for global variable
  'nSubjects'
  createInterims: no visible binding for global variable 'nSubjects'
  createNormalParameters: no visible binding for global variable
  'nSubjects'
  createResponse: no visible global function definition for 'ectdstop'
  mstoolkitUnitTests: no visible binding for global variable
  'unitTestPath'
  mstoolkitUnitTests: no visible binding for global variable
  'systemTestPath'
  validNames : <anonymous>: no visible binding for global variable '..nm'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking examples ... OK
• checking tests ... OK
• checking PDF version of manual ... OK