• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'JM/DESCRIPTION' ... OK
• this is package 'JM' version '0.7-0'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'JM' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  H.longAFTWB: no visible binding for global variable 'X'
  H.longAFTWB: no visible binding for global variable 'Xtime'
  H.longAFTWB: no visible binding for global variable 'WW'
  H.longAFTWB: no visible binding for global variable 'gammas'
  H.longAFTWB: no visible binding for global variable 'Xs'
  H.longAFTWB: no visible binding for global variable 'Zsb'
  H.longAFTWB: no visible binding for global variable 'alpha'
  H.longAFTWB: no visible binding for global variable 'wk'
  H.longAFTWB: no visible binding for global variable 'P'
  H.longAFTWB: no visible binding for global variable 'XtX'
  H.longAFTWB: no visible binding for global variable 'sigma'
  H.longAFTWB: no visible binding for global variable 'id.GK'
  H.longAFTWB: no visible binding for global variable 'd'
  H.longAFTWB: no visible binding for global variable 'sigma.t'
  H.longAFTWB: no visible binding for global variable 'ncx'
  H.longAFTWB: no visible binding for global variable 'parameterization'
  H.longAFTWB: no visible binding for global variable 'indFixed'
  H.longAFTWB: no visible binding for global variable 'Dalpha'
  H.longAFTWB: no visible binding for global variable 'Xs.deriv'
  H.longAFTWB: no visible binding for global variable 'p.byt'
  H.longAFTWB: no visible binding for global variable 'wGH'
  H.longPC: no visible binding for global variable 'X'
  H.longPC: no visible binding for global variable 'parameterization'
  H.longPC: no visible binding for global variable 'Xs'
  H.longPC: no visible binding for global variable 'Zsb'
  H.longPC: no visible binding for global variable 'alpha'
  H.longPC: no visible binding for global variable 'Xs.deriv'
  H.longPC: no visible binding for global variable 'indFixed'
  H.longPC: no visible binding for global variable 'Zsb.deriv'
  H.longPC: no visible binding for global variable 'Dalpha'
  H.longPC: no visible binding for global variable 'eta.tw'
  H.longPC: no visible binding for global variable 'XtX'
  H.longPC: no visible binding for global variable 'sigma'
  H.longPC: no visible binding for global variable 'xi'
  H.longPC: no visible binding for global variable 'ind.K'
  H.longPC: no visible binding for global variable 'wkP'
  H.longPC: no visible binding for global variable 'ncx'
  H.longPC: no visible binding for global variable 'id.GK'
  H.longPC: no visible binding for global variable 'p.byt'
  H.longPC: no visible binding for global variable 'wGH'
  H.longSplinePH: no visible binding for global variable 'X'
  H.longSplinePH: no visible binding for global variable
  'parameterization'
  H.longSplinePH: no visible binding for global variable 'Xs'
  H.longSplinePH: no visible binding for global variable 'Zsb'
  H.longSplinePH: no visible binding for global variable 'alpha'
  H.longSplinePH: no visible binding for global variable 'Xs.deriv'
  H.longSplinePH: no visible binding for global variable 'indFixed'
  H.longSplinePH: no visible binding for global variable 'Zsb.deriv'
  H.longSplinePH: no visible binding for global variable 'Dalpha'
  H.longSplinePH: no visible binding for global variable 'eta.tw1'
  H.longSplinePH: no visible binding for global variable 'P'
  H.longSplinePH: no visible binding for global variable 'XtX'
  H.longSplinePH: no visible binding for global variable 'sigma'
  H.longSplinePH: no visible binding for global variable 'wk'
  H.longSplinePH: no visible binding for global variable 'eta.ws'
  H.longSplinePH: no visible binding for global variable 'ncx'
  H.longSplinePH: no visible binding for global variable 'id.GK'
  H.longSplinePH: no visible binding for global variable 'p.byt'
  H.longSplinePH: no visible binding for global variable 'wGH'
  H.longWB: no visible binding for global variable 'X'
  H.longWB: no visible binding for global variable 'parameterization'
  H.longWB: no visible binding for global variable 'Xs'
  H.longWB: no visible binding for global variable 'Zsb'
  H.longWB: no visible binding for global variable 'alpha'
  H.longWB: no visible binding for global variable 'Xs.deriv'
  H.longWB: no visible binding for global variable 'indFixed'
  H.longWB: no visible binding for global variable 'Zsb.deriv'
  H.longWB: no visible binding for global variable 'Dalpha'
  H.longWB: no visible binding for global variable 'eta.tw'
  H.longWB: no visible binding for global variable 'P'
  H.longWB: no visible binding for global variable 'XtX'
  H.longWB: no visible binding for global variable 'sigma'
  H.longWB: no visible binding for global variable 'wk'
  H.longWB: no visible binding for global variable 'sigma.t'
  H.longWB: no visible binding for global variable 'log.st'
  H.longWB: no visible binding for global variable 'ncx'
  H.longWB: no visible binding for global variable 'id.GK'
  H.longWB: no visible binding for global variable 'p.byt'
  H.longWB: no visible binding for global variable 'wGH'
  HessLongPH: no visible binding for global variable 'XtX'
  HessLongPH: no visible binding for global variable 'sigma'
  HessLongPH: no visible binding for global variable 'ncx'
  HessLongPH: no visible binding for global variable 'lambda0.'
  HessLongPH: no visible binding for global variable 'alpha'
  HessLongPH: no visible binding for global variable 'indT'
  HessLongPH: no visible binding for global variable 'p.byt.'
  HessLongPH: no visible binding for global variable 'wGH'
  HessSurvPH: no visible binding for global variable 'indT'
  HessSurvPH: no visible binding for global variable 'ncww'
  HessSurvPH: no visible binding for global variable 'lambda0.'
  HessSurvPH: no visible binding for global variable 'p.byt.'
  HessSurvPH: no visible binding for global variable 'wGH'
  LogLik.phGH: no visible binding for global variable 'ncx'
  LogLik.phGH: no visible binding for global variable 'ncww'
  LogLik.phGH: no visible binding for global variable 'diag.D'
  LogLik.phGH: no visible binding for global variable 'X'
  LogLik.phGH: no visible binding for global variable 'Xtime'
  LogLik.phGH: no visible binding for global variable 'Xtime2'
  LogLik.phGH: no visible binding for global variable 'Ztime.b'
  LogLik.phGH: no visible binding for global variable 'Ztime2.b'
  LogLik.phGH: no visible binding for global variable 'WW'
  LogLik.phGH: no visible binding for global variable 'n'
  LogLik.phGH: no visible binding for global variable 'Ztb'
  LogLik.phGH: no visible binding for global variable 'y'
  LogLik.phGH: no visible binding for global variable 'id'
  LogLik.phGH: no visible binding for global variable 'ind.T0'
  LogLik.phGH: no visible binding for global variable 'k'
  LogLik.phGH: no visible binding for global variable 'unq.indT'
  LogLik.phGH: no visible binding for global variable 'ind.L1'
  LogLik.phGH: no visible binding for global variable 'indT'
  LogLik.phGH: no visible binding for global variable 'd'
  LogLik.phGH: no visible binding for global variable 'ncz'
  LogLik.phGH: no visible binding for global variable 'b'
  LogLik.phGH: no visible binding for global variable 'wGH'
  LogLik.piecewiseGH: no visible binding for global variable
  'list.thetas'
  LogLik.piecewiseGH: no visible binding for global variable 'diag.D'
  LogLik.piecewiseGH: no visible binding for global variable 'X'
  LogLik.piecewiseGH: no visible binding for global variable 'WW'
  LogLik.piecewiseGH: no visible binding for global variable
  'parameterization'
  LogLik.piecewiseGH: no visible binding for global variable 'Xtime'
  LogLik.piecewiseGH: no visible binding for global variable 'Ztime.b'
  LogLik.piecewiseGH: no visible binding for global variable 'Xs'
  LogLik.piecewiseGH: no visible binding for global variable 'Zsb'
  LogLik.piecewiseGH: no visible binding for global variable
  'Xtime.deriv'
  LogLik.piecewiseGH: no visible binding for global variable 'indFixed'
  LogLik.piecewiseGH: no visible binding for global variable
  'Ztime.b.deriv'
  LogLik.piecewiseGH: no visible binding for global variable 'Xs.deriv'
  LogLik.piecewiseGH: no visible binding for global variable 'Zsb.deriv'
  LogLik.piecewiseGH: no visible binding for global variable 'Ztb'
  LogLik.piecewiseGH: no visible binding for global variable 'y'
  LogLik.piecewiseGH: no visible binding for global variable 'id'
  LogLik.piecewiseGH: no visible binding for global variable 'ind.D'
  LogLik.piecewiseGH: no visible binding for global variable 'ind.K'
  LogLik.piecewiseGH: no visible binding for global variable 'wkP'
  LogLik.piecewiseGH: no visible binding for global variable 'id.GK'
  LogLik.piecewiseGH: no visible binding for global variable 'd'
  LogLik.piecewiseGH: no visible binding for global variable 'ncz'
  LogLik.piecewiseGH: no visible binding for global variable 'b'
  LogLik.piecewiseGH: no visible binding for global variable 'k'
  LogLik.piecewiseGH: no visible binding for global variable 'n'
  LogLik.piecewiseGH: no visible binding for global variable 'wGH'
  LogLik.splineGH: no visible binding for global variable 'list.thetas'
  LogLik.splineGH: no visible binding for global variable 'diag.D'
  LogLik.splineGH: no visible binding for global variable 'X'
  LogLik.splineGH: no visible binding for global variable 'W1'
  LogLik.splineGH: no visible binding for global variable 'n'
  LogLik.splineGH: no visible binding for global variable 'W2'
  LogLik.splineGH: no visible binding for global variable
  'parameterization'
  LogLik.splineGH: no visible binding for global variable 'Xtime'
  LogLik.splineGH: no visible binding for global variable 'Ztime.b'
  LogLik.splineGH: no visible binding for global variable 'Xs'
  LogLik.splineGH: no visible binding for global variable 'Zsb'
  LogLik.splineGH: no visible binding for global variable 'Xtime.deriv'
  LogLik.splineGH: no visible binding for global variable 'indFixed'
  LogLik.splineGH: no visible binding for global variable 'Ztime.b.deriv'
  LogLik.splineGH: no visible binding for global variable 'Xs.deriv'
  LogLik.splineGH: no visible binding for global variable 'Zsb.deriv'
  LogLik.splineGH: no visible binding for global variable 'W2s'
  LogLik.splineGH: no visible binding for global variable 'Ztb'
  LogLik.splineGH: no visible binding for global variable 'y'
  LogLik.splineGH: no visible binding for global variable 'id'
  LogLik.splineGH: no visible binding for global variable 'P'
  LogLik.splineGH: no visible binding for global variable 'wk'
  LogLik.splineGH: no visible binding for global variable 'id.GK'
  LogLik.splineGH: no visible binding for global variable 'd'
  LogLik.splineGH: no visible binding for global variable 'ncz'
  LogLik.splineGH: no visible binding for global variable 'b'
  LogLik.splineGH: no visible binding for global variable 'k'
  LogLik.splineGH: no visible binding for global variable 'wGH'
  LogLik.weibullAFTGH: no visible binding for global variable
  'list.thetas'
  LogLik.weibullAFTGH: no visible binding for global variable 'scaleWB'
  LogLik.weibullAFTGH: no visible binding for global variable 'diag.D'
  LogLik.weibullAFTGH: no visible binding for global variable 'X'
  LogLik.weibullAFTGH: no visible binding for global variable 'WW'
  LogLik.weibullAFTGH: no visible binding for global variable
  'parameterization'
  LogLik.weibullAFTGH: no visible binding for global variable 'Xtime'
  LogLik.weibullAFTGH: no visible binding for global variable 'Ztime.b'
  LogLik.weibullAFTGH: no visible binding for global variable 'Xs'
  LogLik.weibullAFTGH: no visible binding for global variable 'Zsb'
  LogLik.weibullAFTGH: no visible binding for global variable
  'Xtime.deriv'
  LogLik.weibullAFTGH: no visible binding for global variable 'indFixed'
  LogLik.weibullAFTGH: no visible binding for global variable
  'Ztime.b.deriv'
  LogLik.weibullAFTGH: no visible binding for global variable 'Xs.deriv'
  LogLik.weibullAFTGH: no visible binding for global variable 'Zsb.deriv'
  LogLik.weibullAFTGH: no visible binding for global variable 'Ztb'
  LogLik.weibullAFTGH: no visible binding for global variable 'y'
  LogLik.weibullAFTGH: no visible binding for global variable 'id'
  LogLik.weibullAFTGH: no visible binding for global variable 'P'
  LogLik.weibullAFTGH: no visible binding for global variable 'wk'
  LogLik.weibullAFTGH: no visible binding for global variable 'id.GK'
  LogLik.weibullAFTGH: no visible binding for global variable 'd'
  LogLik.weibullAFTGH: no visible binding for global variable 'ncz'
  LogLik.weibullAFTGH: no visible binding for global variable 'b'
  LogLik.weibullAFTGH: no visible binding for global variable 'k'
  LogLik.weibullAFTGH: no visible binding for global variable 'n'
  LogLik.weibullAFTGH: no visible binding for global variable 'wGH'
  LogLik.weibullGH: no visible binding for global variable 'list.thetas'
  LogLik.weibullGH: no visible binding for global variable 'scaleWB'
  LogLik.weibullGH: no visible binding for global variable 'diag.D'
  LogLik.weibullGH: no visible binding for global variable 'X'
  LogLik.weibullGH: no visible binding for global variable 'WW'
  LogLik.weibullGH: no visible binding for global variable
  'parameterization'
  LogLik.weibullGH: no visible binding for global variable 'Xtime'
  LogLik.weibullGH: no visible binding for global variable 'Ztime.b'
  LogLik.weibullGH: no visible binding for global variable 'Xs'
  LogLik.weibullGH: no visible binding for global variable 'Zsb'
  LogLik.weibullGH: no visible binding for global variable 'Xtime.deriv'
  LogLik.weibullGH: no visible binding for global variable 'indFixed'
  LogLik.weibullGH: no visible binding for global variable
  'Ztime.b.deriv'
  LogLik.weibullGH: no visible binding for global variable 'Xs.deriv'
  LogLik.weibullGH: no visible binding for global variable 'Zsb.deriv'
  LogLik.weibullGH: no visible binding for global variable 'Ztb'
  LogLik.weibullGH: no visible binding for global variable 'y'
  LogLik.weibullGH: no visible binding for global variable 'id'
  LogLik.weibullGH: no visible binding for global variable 'logT'
  LogLik.weibullGH: no visible binding for global variable 'P'
  LogLik.weibullGH: no visible binding for global variable 'wk'
  LogLik.weibullGH: no visible binding for global variable 'log.st'
  LogLik.weibullGH: no visible binding for global variable 'id.GK'
  LogLik.weibullGH: no visible binding for global variable 'd'
  LogLik.weibullGH: no visible binding for global variable 'ncz'
  LogLik.weibullGH: no visible binding for global variable 'b'
  LogLik.weibullGH: no visible binding for global variable 'k'
  LogLik.weibullGH: no visible binding for global variable 'n'
  LogLik.weibullGH: no visible binding for global variable 'wGH'
  MI.fixed.times: no visible binding for global variable 'obs.times'
  MI.fixed.times: no visible binding for global variable 'id'
  MI.fixed.times: no visible binding for global variable 'object'
  MI.fixed.times: no visible binding for global variable 'n'
  MI.fixed.times: no visible binding for global variable 'y'
  MI.fixed.times: no visible binding for global variable 'logT'
  MI.fixed.times: no visible binding for global variable 'd'
  MI.fixed.times: no visible binding for global variable 'X'
  MI.fixed.times: no visible binding for global variable 'Z'
  MI.fixed.times: no visible binding for global variable 'Xtime'
  MI.fixed.times: no visible binding for global variable 'Ztime'
  MI.fixed.times: no visible binding for global variable 'method'
  MI.fixed.times: no visible binding for global variable 'P'
  MI.fixed.times: no visible binding for global variable 'log.st'
  MI.fixed.times: no visible binding for global variable 'Xs'
  MI.fixed.times: no visible binding for global variable 'Zs'
  MI.fixed.times: no visible binding for global variable 'W2s'
  MI.fixed.times: no visible binding for global variable 'W2'
  MI.fixed.times: no visible binding for global variable 'st'
  MI.fixed.times: no visible binding for global variable 'ind.D'
  MI.fixed.times: no visible binding for global variable 'ind.K'
  MI.fixed.times: no visible binding for global variable 'wkP'
  MI.fixed.times: no visible binding for global variable 'WW'
  MI.fixed.times: no visible binding for global variable 'ncz'
  MI.fixed.times: no visible binding for global variable 'type'
  MI.fixed.times: no visible binding for global variable 'M'
  MI.fixed.times : <anonymous>: no visible binding for global variable
  'ncz'
  MI.fixed.times : <anonymous>: no visible binding for global variable
  'M'
  MI.fixed.times : <anonymous>: no visible binding for global variable
  'object'
  MI.fixed.times : <anonymous>: no visible binding for global variable
  'type'
  MI.fixed.times : <anonymous> : <anonymous>: no visible binding for
  global variable 'ncz'
  MI.fixed.times : <anonymous> : <anonymous>: no visible binding for
  global variable 'object'
  MI.fixed.times: no visible binding for global variable 'return.data'
  MI.random.times: no visible binding for global variable 'obs.times'
  MI.random.times: no visible binding for global variable 'ni'
  MI.random.times: no visible binding for global variable 'object'
  MI.random.times: no visible binding for global variable 'y'
  MI.random.times: no visible binding for global variable 'logT'
  MI.random.times: no visible binding for global variable 'd'
  MI.random.times: no visible binding for global variable 'X'
  MI.random.times: no visible binding for global variable 'Z'
  MI.random.times: no visible binding for global variable 'Xtime'
  MI.random.times: no visible binding for global variable 'Ztime'
  MI.random.times: no visible binding for global variable 'method'
  MI.random.times: no visible binding for global variable 'P'
  MI.random.times: no visible binding for global variable 'log.st'
  MI.random.times: no visible binding for global variable 'Xs'
  MI.random.times: no visible binding for global variable 'Zs'
  MI.random.times: no visible binding for global variable 'W2s'
  MI.random.times: no visible binding for global variable 'W2'
  MI.random.times: no visible binding for global variable 'st'
  MI.random.times: no visible binding for global variable 'ind.D'
  MI.random.times: no visible binding for global variable 'ind.K'
  MI.random.times: no visible binding for global variable 'wkP'
  MI.random.times: no visible binding for global variable 'WW'
  MI.random.times: no visible binding for global variable 'id'
  MI.random.times: no visible binding for global variable 'ncz'
  MI.random.times: no visible binding for global variable 'M'
  MI.random.times: no visible binding for global variable 'n'
  MI.random.times: no visible binding for global variable 'type'
  MI.random.times : <anonymous>: no visible binding for global variable
  'ncz'
  MI.random.times : <anonymous>: no visible binding for global variable
  'object'
  MI.random.times : <anonymous>: no visible binding for global variable
  'n'
  S.b: no visible binding for global variable 'method'
  S.b: no visible binding for global variable 'data.id'
  S.b: no visible binding for global variable 'timeVar'
  S.b: no visible binding for global variable 'object'
  S.b: no visible binding for global variable 'TermsY'
  S.b: no visible binding for global variable 'parameterization'
  S.b: no visible binding for global variable 'formYx'
  S.b: no visible binding for global variable 'betas.new'
  S.b: no visible binding for global variable 'derivForm'
  S.b: no visible binding for global variable 'indFixed'
  S.b: no visible binding for global variable 'indRandom'
  S.b: no visible binding for global variable 'alpha.new'
  S.b: no visible binding for global variable 'Dalpha.new'
  S.b: no visible binding for global variable 'W'
  S.b: no visible binding for global variable 'gammas.new'
  S.b: no visible binding for global variable 'sigma.t.new'
  S.b: no visible binding for global variable 'strt'
  S.b : <anonymous>: no visible binding for global variable 'object'
  S.b: no visible binding for global variable 'gammas.bs.new'
  S.b: no visible binding for global variable 'survTimes'
  S.b: no visible binding for global variable 'Q'
  S.b: no visible binding for global variable 'xi.new'
  Score.phGH: no visible binding for global variable 'ncx'
  Score.phGH: no visible binding for global variable 'ncww'
  Score.phGH: no visible binding for global variable 'diag.D'
  Score.phGH: no visible binding for global variable 'X'
  Score.phGH: no visible binding for global variable 'Xtime'
  Score.phGH: no visible binding for global variable 'Xtime2'
  Score.phGH: no visible binding for global variable 'Ztime.b'
  Score.phGH: no visible binding for global variable 'Ztime2.b'
  Score.phGH: no visible binding for global variable 'WW'
  Score.phGH: no visible binding for global variable 'n'
  Score.phGH: no visible binding for global variable 'Ztb'
  Score.phGH: no visible binding for global variable 'y'
  Score.phGH: no visible binding for global variable 'id'
  Score.phGH: no visible binding for global variable 'lambda0'
  Score.phGH: no visible binding for global variable 'ind.T0'
  Score.phGH: no visible binding for global variable 'ind.L1'
  Score.phGH: no visible binding for global variable 'k'
  Score.phGH: no visible binding for global variable 'unq.indT'
  Score.phGH: no visible binding for global variable 'indT'
  Score.phGH: no visible binding for global variable 'd'
  Score.phGH: no visible binding for global variable 'ncz'
  Score.phGH: no visible binding for global variable 'b'
  Score.phGH: no visible binding for global variable 'wGH'
  Score.phGH: no visible binding for global variable 'b2'
  Score.phGH: no visible binding for global variable 'Z'
  Score.phGH: no visible binding for global variable 'ZtZ'
  Score.phGH: no visible binding for global variable 'N'
  Score.piecewiseGH: no visible binding for global variable 'list.thetas'
  Score.piecewiseGH: no visible binding for global variable 'diag.D'
  Score.piecewiseGH: no visible binding for global variable 'X'
  Score.piecewiseGH: no visible binding for global variable 'WW'
  Score.piecewiseGH: no visible binding for global variable 'n'
  Score.piecewiseGH: no visible binding for global variable
  'parameterization'
  Score.piecewiseGH: no visible binding for global variable 'Xtime'
  Score.piecewiseGH: no visible binding for global variable 'Ztime.b'
  Score.piecewiseGH: no visible binding for global variable 'Xs'
  Score.piecewiseGH: no visible binding for global variable 'Zsb'
  Score.piecewiseGH: no visible binding for global variable 'Xtime.deriv'
  Score.piecewiseGH: no visible binding for global variable 'indFixed'
  Score.piecewiseGH: no visible binding for global variable
  'Ztime.b.deriv'
  Score.piecewiseGH: no visible binding for global variable 'Xs.deriv'
  Score.piecewiseGH: no visible binding for global variable 'Zsb.deriv'
  Score.piecewiseGH: no visible binding for global variable 'Ztb'
  Score.piecewiseGH: no visible binding for global variable 'y'
  Score.piecewiseGH: no visible binding for global variable 'id'
  Score.piecewiseGH: no visible binding for global variable 'ind.D'
  Score.piecewiseGH: no visible binding for global variable 'ind.K'
  Score.piecewiseGH: no visible binding for global variable 'wkP'
  Score.piecewiseGH: no visible binding for global variable 'id.GK'
  Score.piecewiseGH: no visible binding for global variable 'd'
  Score.piecewiseGH: no visible binding for global variable 'ncz'
  Score.piecewiseGH: no visible binding for global variable 'b'
  Score.piecewiseGH: no visible binding for global variable 'k'
  Score.piecewiseGH: no visible binding for global variable 'wGH'
  Score.piecewiseGH: no visible binding for global variable 'b2'
  Score.piecewiseGH: no visible binding for global variable 'Z'
  Score.piecewiseGH: no visible binding for global variable 'ZtZ'
  Score.piecewiseGH: no visible binding for global variable 'ncx'
  Score.piecewiseGH: no visible binding for global variable 'N'
  Score.piecewiseGH: no visible binding for global variable 'Q'
  Score.splineGH: no visible binding for global variable 'list.thetas'
  Score.splineGH: no visible binding for global variable 'diag.D'
  Score.splineGH: no visible binding for global variable 'X'
  Score.splineGH: no visible binding for global variable 'W1'
  Score.splineGH: no visible binding for global variable 'n'
  Score.splineGH: no visible binding for global variable 'W2'
  Score.splineGH: no visible binding for global variable
  'parameterization'
  Score.splineGH: no visible binding for global variable 'Xtime'
  Score.splineGH: no visible binding for global variable 'Ztime.b'
  Score.splineGH: no visible binding for global variable 'Xs'
  Score.splineGH: no visible binding for global variable 'Zsb'
  Score.splineGH: no visible binding for global variable 'Xtime.deriv'
  Score.splineGH: no visible binding for global variable 'indFixed'
  Score.splineGH: no visible binding for global variable 'Ztime.b.deriv'
  Score.splineGH: no visible binding for global variable 'Xs.deriv'
  Score.splineGH: no visible binding for global variable 'Zsb.deriv'
  Score.splineGH: no visible binding for global variable 'W2s'
  Score.splineGH: no visible binding for global variable 'P'
  Score.splineGH: no visible binding for global variable 'Ztb'
  Score.splineGH: no visible binding for global variable 'y'
  Score.splineGH: no visible binding for global variable 'id'
  Score.splineGH: no visible binding for global variable 'wk'
  Score.splineGH: no visible binding for global variable 'id.GK'
  Score.splineGH: no visible binding for global variable 'd'
  Score.splineGH: no visible binding for global variable 'ncz'
  Score.splineGH: no visible binding for global variable 'b'
  Score.splineGH: no visible binding for global variable 'k'
  Score.splineGH: no visible binding for global variable 'wGH'
  Score.splineGH: no visible binding for global variable 'b2'
  Score.splineGH: no visible binding for global variable 'Z'
  Score.splineGH: no visible binding for global variable 'ZtZ'
  Score.splineGH: no visible binding for global variable 'ncx'
  Score.splineGH: no visible binding for global variable 'N'
  Score.splineGH: no visible binding for global variable 'nk'
  Score.weibullAFTGH: no visible binding for global variable
  'list.thetas'
  Score.weibullAFTGH: no visible binding for global variable 'scaleWB'
  Score.weibullAFTGH: no visible binding for global variable 'diag.D'
  Score.weibullAFTGH: no visible binding for global variable 'X'
  Score.weibullAFTGH: no visible binding for global variable 'WW'
  Score.weibullAFTGH: no visible binding for global variable
  'parameterization'
  Score.weibullAFTGH: no visible binding for global variable 'Xtime'
  Score.weibullAFTGH: no visible binding for global variable 'Ztime.b'
  Score.weibullAFTGH: no visible binding for global variable 'Xs'
  Score.weibullAFTGH: no visible binding for global variable 'Zsb'
  Score.weibullAFTGH: no visible binding for global variable
  'Xtime.deriv'
  Score.weibullAFTGH: no visible binding for global variable 'indFixed'
  Score.weibullAFTGH: no visible binding for global variable
  'Ztime.b.deriv'
  Score.weibullAFTGH: no visible binding for global variable 'Xs.deriv'
  Score.weibullAFTGH: no visible binding for global variable 'Zsb.deriv'
  Score.weibullAFTGH: no visible binding for global variable 'wk'
  Score.weibullAFTGH: no visible binding for global variable 'P'
  Score.weibullAFTGH: no visible binding for global variable 'Ztb'
  Score.weibullAFTGH: no visible binding for global variable 'y'
  Score.weibullAFTGH: no visible binding for global variable 'id'
  Score.weibullAFTGH: no visible binding for global variable 'id.GK'
  Score.weibullAFTGH: no visible binding for global variable 'd'
  Score.weibullAFTGH: no visible binding for global variable 'ncz'
  Score.weibullAFTGH: no visible binding for global variable 'b'
  Score.weibullAFTGH: no visible binding for global variable 'k'
  Score.weibullAFTGH: no visible binding for global variable 'n'
  Score.weibullAFTGH: no visible binding for global variable 'wGH'
  Score.weibullAFTGH: no visible binding for global variable 'b2'
  Score.weibullAFTGH: no visible binding for global variable 'Z'
  Score.weibullAFTGH: no visible binding for global variable 'ZtZ'
  Score.weibullAFTGH: no visible binding for global variable 'ncx'
  Score.weibullAFTGH: no visible binding for global variable 'N'
  Score.weibullGH: no visible binding for global variable 'list.thetas'
  Score.weibullGH: no visible binding for global variable 'scaleWB'
  Score.weibullGH: no visible binding for global variable 'diag.D'
  Score.weibullGH: no visible binding for global variable 'X'
  Score.weibullGH: no visible binding for global variable 'WW'
  Score.weibullGH: no visible binding for global variable
  'parameterization'
  Score.weibullGH: no visible binding for global variable 'Xtime'
  Score.weibullGH: no visible binding for global variable 'Ztime.b'
  Score.weibullGH: no visible binding for global variable 'Xs'
  Score.weibullGH: no visible binding for global variable 'Zsb'
  Score.weibullGH: no visible binding for global variable 'Xtime.deriv'
  Score.weibullGH: no visible binding for global variable 'indFixed'
  Score.weibullGH: no visible binding for global variable 'Ztime.b.deriv'
  Score.weibullGH: no visible binding for global variable 'Xs.deriv'
  Score.weibullGH: no visible binding for global variable 'Zsb.deriv'
  Score.weibullGH: no visible binding for global variable 'P'
  Score.weibullGH: no visible binding for global variable 'Ztb'
  Score.weibullGH: no visible binding for global variable 'y'
  Score.weibullGH: no visible binding for global variable 'id'
  Score.weibullGH: no visible binding for global variable 'logT'
  Score.weibullGH: no visible binding for global variable 'wk'
  Score.weibullGH: no visible binding for global variable 'log.st'
  Score.weibullGH: no visible binding for global variable 'id.GK'
  Score.weibullGH: no visible binding for global variable 'd'
  Score.weibullGH: no visible binding for global variable 'ncz'
  Score.weibullGH: no visible binding for global variable 'b'
  Score.weibullGH: no visible binding for global variable 'k'
  Score.weibullGH: no visible binding for global variable 'n'
  Score.weibullGH: no visible binding for global variable 'wGH'
  Score.weibullGH: no visible binding for global variable 'b2'
  Score.weibullGH: no visible binding for global variable 'Z'
  Score.weibullGH: no visible binding for global variable 'ZtZ'
  Score.weibullGH: no visible binding for global variable 'ncx'
  Score.weibullGH: no visible binding for global variable 'N'
  Score.weibullGH: no visible binding for global variable 'st'
  dynC.coxph: no visible binding for global variable 'B'
  dynC.coxph: no visible binding for global variable 'verbose'
  fn: no visible binding for global variable 'eta.yxi'
  fn: no visible binding for global variable 'Z.ind.i'
  fn: no visible binding for global variable 'ni'
  fn: no visible binding for global variable 'i'
  fn: no visible binding for global variable 'alpha'
  fn: no visible binding for global variable 'eta.si'
  fn: no visible binding for global variable 'Zsi'
  fn: no visible binding for global variable 'GKk'
  fn: no visible binding for global variable 'yi'
  fn: no visible binding for global variable 'sigma'
  fn: no visible binding for global variable 'd'
  fn: no visible binding for global variable 'eta.tw1i'
  fn: no visible binding for global variable 'eta.tw2i'
  fn: no visible binding for global variable 'eta.yxT'
  fn: no visible binding for global variable 'Ztime.i'
  fn: no visible binding for global variable 'Pi'
  fn: no visible binding for global variable 'wk'
  fn: no visible binding for global variable 'eta.wsi'
  fn: no visible binding for global variable 'diag.D'
  gr: no visible binding for global variable 'Z.ind.i'
  gr: no visible binding for global variable 'yi.eta.yxi'
  gr: no visible binding for global variable 'sigma'
  gr: no visible binding for global variable 'alpha'
  gr: no visible binding for global variable 'eta.si'
  gr: no visible binding for global variable 'Zsi'
  gr: no visible binding for global variable 'GKk'
  gr: no visible binding for global variable 'ncz'
  gr: no visible binding for global variable 'd'
  gr: no visible binding for global variable 'i'
  gr: no visible binding for global variable 'Ztime.i'
  gr: no visible binding for global variable 'eta.tw1i'
  gr: no visible binding for global variable 'Pi'
  gr: no visible binding for global variable 'wk'
  gr: no visible binding for global variable 'eta.wsi'
  gr: no visible binding for global variable 'diag.D'
  gr.longAFTWB: no visible binding for global variable 'X'
  gr.longAFTWB: no visible binding for global variable 'parameterization'
  gr.longAFTWB: no visible binding for global variable 'Xs'
  gr.longAFTWB: no visible binding for global variable 'Zsb'
  gr.longAFTWB: no visible binding for global variable 'alpha'
  gr.longAFTWB: no visible binding for global variable 'Xs.deriv'
  gr.longAFTWB: no visible binding for global variable 'indFixed'
  gr.longAFTWB: no visible binding for global variable 'Zsb.deriv'
  gr.longAFTWB: no visible binding for global variable 'Dalpha'
  gr.longAFTWB: no visible binding for global variable 'wk'
  gr.longAFTWB: no visible binding for global variable 'eta.tw'
  gr.longAFTWB: no visible binding for global variable 'P'
  gr.longAFTWB: no visible binding for global variable 'y'
  gr.longAFTWB: no visible binding for global variable 'Zb'
  gr.longAFTWB: no visible binding for global variable 'sigma'
  gr.longAFTWB: no visible binding for global variable 'id.GK'
  gr.longAFTWB: no visible binding for global variable 'd'
  gr.longAFTWB: no visible binding for global variable 'sigma.t'
  gr.longAFTWB: no visible binding for global variable 'ncx'
  gr.longAFTWB: no visible binding for global variable 'p.byt'
  gr.longAFTWB: no visible binding for global variable 'wGH'
  gr.longAFTWB: no visible binding for global variable 'Xtime'
  gr.longAFTWB: no visible binding for global variable 'Xtime.deriv'
  gr.longPC: no visible binding for global variable 'X'
  gr.longPC: no visible binding for global variable 'parameterization'
  gr.longPC: no visible binding for global variable 'Xs'
  gr.longPC: no visible binding for global variable 'Zsb'
  gr.longPC: no visible binding for global variable 'alpha'
  gr.longPC: no visible binding for global variable 'Xs.deriv'
  gr.longPC: no visible binding for global variable 'indFixed'
  gr.longPC: no visible binding for global variable 'Zsb.deriv'
  gr.longPC: no visible binding for global variable 'Dalpha'
  gr.longPC: no visible binding for global variable 'eta.tw'
  gr.longPC: no visible binding for global variable 'y'
  gr.longPC: no visible binding for global variable 'Zb'
  gr.longPC: no visible binding for global variable 'sigma'
  gr.longPC: no visible binding for global variable 'xi'
  gr.longPC: no visible binding for global variable 'ind.K'
  gr.longPC: no visible binding for global variable 'wkP'
  gr.longPC: no visible binding for global variable 'ncx'
  gr.longPC: no visible binding for global variable 'id.GK'
  gr.longPC: no visible binding for global variable 'p.byt'
  gr.longPC: no visible binding for global variable 'wGH'
  gr.longPC: no visible binding for global variable 'd'
  gr.longPC: no visible binding for global variable 'Xtime'
  gr.longPC: no visible binding for global variable 'Xtime.deriv'
  gr.longPH: no visible binding for global variable 'X'
  gr.longPH: no visible binding for global variable 'Xtime'
  gr.longPH: no visible binding for global variable 'Xtime2'
  gr.longPH: no visible binding for global variable 'Ztime.b'
  gr.longPH: no visible binding for global variable 'Ztime2.b'
  gr.longPH: no visible binding for global variable 'eta.tw'
  gr.longPH: no visible binding for global variable 'alpha'
  gr.longPH: no visible binding for global variable 'y'
  gr.longPH: no visible binding for global variable 'Zb'
  gr.longPH: no visible binding for global variable 'sigma'
  gr.longPH: no visible binding for global variable 'lambda0'
  gr.longPH: no visible binding for global variable 'ind.L1'
  gr.longPH: no visible binding for global variable 'ncx'
  gr.longPH: no visible binding for global variable 'n'
  gr.longPH: no visible binding for global variable 'k'
  gr.longPH: no visible binding for global variable 'unq.indT'
  gr.longPH: no visible binding for global variable 'indT'
  gr.longPH: no visible binding for global variable 'p.byt'
  gr.longPH: no visible binding for global variable 'wGH'
  gr.longPH: no visible binding for global variable 'd'
  gr.longSplinePH: no visible binding for global variable 'X'
  gr.longSplinePH: no visible binding for global variable
  'parameterization'
  gr.longSplinePH: no visible binding for global variable 'Xs'
  gr.longSplinePH: no visible binding for global variable 'Zsb'
  gr.longSplinePH: no visible binding for global variable 'alpha'
  gr.longSplinePH: no visible binding for global variable 'Xs.deriv'
  gr.longSplinePH: no visible binding for global variable 'indFixed'
  gr.longSplinePH: no visible binding for global variable 'Zsb.deriv'
  gr.longSplinePH: no visible binding for global variable 'Dalpha'
  gr.longSplinePH: no visible binding for global variable 'eta.tw1'
  gr.longSplinePH: no visible binding for global variable 'P'
  gr.longSplinePH: no visible binding for global variable 'y'
  gr.longSplinePH: no visible binding for global variable 'Zb'
  gr.longSplinePH: no visible binding for global variable 'sigma'
  gr.longSplinePH: no visible binding for global variable 'wk'
  gr.longSplinePH: no visible binding for global variable 'eta.ws'
  gr.longSplinePH: no visible binding for global variable 'ncx'
  gr.longSplinePH: no visible binding for global variable 'id.GK'
  gr.longSplinePH: no visible binding for global variable 'p.byt'
  gr.longSplinePH: no visible binding for global variable 'wGH'
  gr.longSplinePH: no visible binding for global variable 'd'
  gr.longSplinePH: no visible binding for global variable 'Xtime'
  gr.longSplinePH: no visible binding for global variable 'Xtime.deriv'
  gr.longWB: no visible binding for global variable 'X'
  gr.longWB: no visible binding for global variable 'parameterization'
  gr.longWB: no visible binding for global variable 'Xs'
  gr.longWB: no visible binding for global variable 'Zsb'
  gr.longWB: no visible binding for global variable 'alpha'
  gr.longWB: no visible binding for global variable 'Xs.deriv'
  gr.longWB: no visible binding for global variable 'indFixed'
  gr.longWB: no visible binding for global variable 'Zsb.deriv'
  gr.longWB: no visible binding for global variable 'Dalpha'
  gr.longWB: no visible binding for global variable 'eta.tw'
  gr.longWB: no visible binding for global variable 'P'
  gr.longWB: no visible binding for global variable 'y'
  gr.longWB: no visible binding for global variable 'Zb'
  gr.longWB: no visible binding for global variable 'sigma'
  gr.longWB: no visible binding for global variable 'wk'
  gr.longWB: no visible binding for global variable 'sigma.t'
  gr.longWB: no visible binding for global variable 'log.st'
  gr.longWB: no visible binding for global variable 'ncx'
  gr.longWB: no visible binding for global variable 'id.GK'
  gr.longWB: no visible binding for global variable 'p.byt'
  gr.longWB: no visible binding for global variable 'wGH'
  gr.longWB: no visible binding for global variable 'd'
  gr.longWB: no visible binding for global variable 'Xtime'
  gr.longWB: no visible binding for global variable 'Xtime.deriv'
  gr.survAFTWB: no visible binding for global variable 'list.thetas'
  gr.survAFTWB: no visible binding for global variable 'scaleWB'
  gr.survAFTWB: no visible binding for global variable 'WW'
  gr.survAFTWB: no visible binding for global variable 'parameterization'
  gr.survAFTWB: no visible binding for global variable 'Y'
  gr.survAFTWB: no visible binding for global variable 'Y.deriv'
  gr.survAFTWB: no visible binding for global variable 'Ys'
  gr.survAFTWB: no visible binding for global variable 'Ys.deriv'
  gr.survAFTWB: no visible binding for global variable 'wk'
  gr.survAFTWB: no visible binding for global variable 'P'
  gr.survAFTWB: no visible binding for global variable 'id.GK'
  gr.survAFTWB: no visible binding for global variable 'd'
  gr.survAFTWB: no visible binding for global variable 'p.byt'
  gr.survAFTWB: no visible binding for global variable 'wGH'
  gr.survPC: no visible binding for global variable 'list.thetas'
  gr.survPC: no visible binding for global variable 'WW'
  gr.survPC: no visible binding for global variable 'n'
  gr.survPC: no visible binding for global variable 'parameterization'
  gr.survPC: no visible binding for global variable 'Y'
  gr.survPC: no visible binding for global variable 'Y.deriv'
  gr.survPC: no visible binding for global variable 'Ys'
  gr.survPC: no visible binding for global variable 'Ys.deriv'
  gr.survPC: no visible binding for global variable 'wkP'
  gr.survPC: no visible binding for global variable 'ind.K'
  gr.survPC: no visible binding for global variable 'd'
  gr.survPC: no visible binding for global variable 'p.byt'
  gr.survPC: no visible binding for global variable 'id.GK'
  gr.survPC: no visible binding for global variable 'wGH'
  gr.survPC: no visible binding for global variable 'Q'
  gr.survPC: no visible binding for global variable 'ind.D'
  gr.survPH: no visible binding for global variable 'ncww'
  gr.survPH: no visible binding for global variable 'WW'
  gr.survPH: no visible binding for global variable 'n'
  gr.survPH: no visible binding for global variable 'Y'
  gr.survPH: no visible binding for global variable 'Y2'
  gr.survPH: no visible binding for global variable 'lambda0'
  gr.survPH: no visible binding for global variable 'ind.L1'
  gr.survPH: no visible binding for global variable 'k'
  gr.survPH: no visible binding for global variable 'unq.indT'
  gr.survPH: no visible binding for global variable 'indT'
  gr.survPH: no visible binding for global variable 'd'
  gr.survPH: no visible binding for global variable 'p.byt'
  gr.survPH: no visible binding for global variable 'wGH'
  gr.survSplinePH: no visible binding for global variable 'list.thetas'
  gr.survSplinePH: no visible binding for global variable 'W1'
  gr.survSplinePH: no visible binding for global variable 'n'
  gr.survSplinePH: no visible binding for global variable 'W2'
  gr.survSplinePH: no visible binding for global variable
  'parameterization'
  gr.survSplinePH: no visible binding for global variable 'Y'
  gr.survSplinePH: no visible binding for global variable 'Y.deriv'
  gr.survSplinePH: no visible binding for global variable 'Ys'
  gr.survSplinePH: no visible binding for global variable 'Ys.deriv'
  gr.survSplinePH: no visible binding for global variable 'W2s'
  gr.survSplinePH: no visible binding for global variable 'P'
  gr.survSplinePH: no visible binding for global variable 'wk'
  gr.survSplinePH: no visible binding for global variable 'id.GK'
  gr.survSplinePH: no visible binding for global variable 'p.byt'
  gr.survSplinePH: no visible binding for global variable 'wGH'
  gr.survSplinePH: no visible binding for global variable 'd'
  gr.survSplinePH: no visible binding for global variable 'nk'
  gr.survWB: no visible binding for global variable 'list.thetas'
  gr.survWB: no visible binding for global variable 'scaleWB'
  gr.survWB: no visible binding for global variable 'WW'
  gr.survWB: no visible binding for global variable 'parameterization'
  gr.survWB: no visible binding for global variable 'Y'
  gr.survWB: no visible binding for global variable 'Y.deriv'
  gr.survWB: no visible binding for global variable 'Ys'
  gr.survWB: no visible binding for global variable 'Ys.deriv'
  gr.survWB: no visible binding for global variable 'P'
  gr.survWB: no visible binding for global variable 'wk'
  gr.survWB: no visible binding for global variable 'log.st'
  gr.survWB: no visible binding for global variable 'id.GK'
  gr.survWB: no visible binding for global variable 'p.byt'
  gr.survWB: no visible binding for global variable 'wGH'
  gr.survWB: no visible binding for global variable 'd'
  gr.survWB: no visible binding for global variable 'st'
  gr.survWB: no visible binding for global variable 'logT'
  h.b: no visible binding for global variable 'method'
  h.b: no visible binding for global variable 'data.id'
  h.b: no visible binding for global variable 'timeVar'
  h.b: no visible binding for global variable 'object'
  h.b: no visible binding for global variable 'TermsY'
  h.b: no visible binding for global variable 'W'
  h.b: no visible binding for global variable 'gammas.new'
  h.b: no visible binding for global variable 'betas.new'
  h.b: no visible binding for global variable 'sigma.t.new'
  h.b: no visible binding for global variable 'alpha.new'
  h.b: no visible binding for global variable 'survTimes'
  h.b: no visible binding for global variable 'xi'
  jointModel: no visible global function definition for 'chLaplace.fit'
  log.posterior.b: no visible binding for global variable 'id'
  log.posterior.b: no visible binding for global variable 'X'
  log.posterior.b: no visible binding for global variable 'Z'
  log.posterior.b: no visible binding for global variable 'betas.new'
  log.posterior.b: no visible binding for global variable 'sigma.new'
  log.posterior.b: no visible binding for global variable 'ncz'
  log.posterior.b: no visible binding for global variable 'D.new'
  log.posterior.b: no visible binding for global variable 'data.id'
  log.posterior.b: no visible binding for global variable 'timeVar'
  log.posterior.b: no visible binding for global variable 'object'
  log.posterior.b: no visible binding for global variable 'TermsY'
  log.posterior.b: no visible binding for global variable
  'parameterization'
  log.posterior.b: no visible binding for global variable 'formYx'
  log.posterior.b: no visible binding for global variable 'derivForm'
  log.posterior.b: no visible binding for global variable 'betas'
  log.posterior.b: no visible binding for global variable 'indFixed'
  log.posterior.b: no visible binding for global variable 'indRandom'
  log.posterior.b: no visible binding for global variable 'alpha.new'
  log.posterior.b: no visible binding for global variable 'Dalpha.new'
  log.posterior.b: no visible binding for global variable 'W'
  log.posterior.b: no visible binding for global variable 'gammas.new'
  log.posterior.b: no visible binding for global variable 'sigma.t.new'
  log.posterior.b: no visible binding for global variable 'strt'
  log.posterior.b : <anonymous>: no visible binding for global variable
  'object'
  log.posterior.b: no visible binding for global variable 'gammas.bs.new'
  log.posterior.b: no visible binding for global variable 'survTimes'
  log.posterior.b: no visible binding for global variable 'Q'
  log.posterior.b: no visible binding for global variable 'xi.new'
  opt.longAFTWB: no visible binding for global variable 'X'
  opt.longAFTWB: no visible binding for global variable
  'parameterization'
  opt.longAFTWB: no visible binding for global variable 'Xtime'
  opt.longAFTWB: no visible binding for global variable 'Ztime.b'
  opt.longAFTWB: no visible binding for global variable 'Xs'
  opt.longAFTWB: no visible binding for global variable 'Zsb'
  opt.longAFTWB: no visible binding for global variable 'eta.tw'
  opt.longAFTWB: no visible binding for global variable 'alpha'
  opt.longAFTWB: no visible binding for global variable 'Xtime.deriv'
  opt.longAFTWB: no visible binding for global variable 'indFixed'
  opt.longAFTWB: no visible binding for global variable 'Ztime.b.deriv'
  opt.longAFTWB: no visible binding for global variable 'Xs.deriv'
  opt.longAFTWB: no visible binding for global variable 'Zsb.deriv'
  opt.longAFTWB: no visible binding for global variable 'Dalpha'
  opt.longAFTWB: no visible binding for global variable 'Ztb'
  opt.longAFTWB: no visible binding for global variable 'y'
  opt.longAFTWB: no visible binding for global variable 'sigma'
  opt.longAFTWB: no visible binding for global variable 'id'
  opt.longAFTWB: no visible binding for global variable 'P'
  opt.longAFTWB: no visible binding for global variable 'wk'
  opt.longAFTWB: no visible binding for global variable 'id.GK'
  opt.longAFTWB: no visible binding for global variable 'sigma.t'
  opt.longAFTWB: no visible binding for global variable 'd'
  opt.longAFTWB: no visible binding for global variable 'p.byt'
  opt.longAFTWB: no visible binding for global variable 'wGH'
  opt.longPC: no visible binding for global variable 'X'
  opt.longPC: no visible binding for global variable 'parameterization'
  opt.longPC: no visible binding for global variable 'Xtime'
  opt.longPC: no visible binding for global variable 'Ztime.b'
  opt.longPC: no visible binding for global variable 'Xs'
  opt.longPC: no visible binding for global variable 'Zsb'
  opt.longPC: no visible binding for global variable 'eta.tw'
  opt.longPC: no visible binding for global variable 'alpha'
  opt.longPC: no visible binding for global variable 'Xtime.deriv'
  opt.longPC: no visible binding for global variable 'indFixed'
  opt.longPC: no visible binding for global variable 'Ztime.b.deriv'
  opt.longPC: no visible binding for global variable 'Xs.deriv'
  opt.longPC: no visible binding for global variable 'Zsb.deriv'
  opt.longPC: no visible binding for global variable 'Dalpha'
  opt.longPC: no visible binding for global variable 'Ztb'
  opt.longPC: no visible binding for global variable 'y'
  opt.longPC: no visible binding for global variable 'sigma'
  opt.longPC: no visible binding for global variable 'id'
  opt.longPC: no visible binding for global variable 'xi'
  opt.longPC: no visible binding for global variable 'ind.D'
  opt.longPC: no visible binding for global variable 'ind.K'
  opt.longPC: no visible binding for global variable 'wkP'
  opt.longPC: no visible binding for global variable 'id.GK'
  opt.longPC: no visible binding for global variable 'd'
  opt.longPC: no visible binding for global variable 'p.byt'
  opt.longPC: no visible binding for global variable 'wGH'
  opt.longPH: no visible binding for global variable 'X'
  opt.longPH: no visible binding for global variable 'Xtime'
  opt.longPH: no visible binding for global variable 'Xtime2'
  opt.longPH: no visible binding for global variable 'Ztime.b'
  opt.longPH: no visible binding for global variable 'Ztime2.b'
  opt.longPH: no visible binding for global variable 'eta.tw'
  opt.longPH: no visible binding for global variable 'alpha'
  opt.longPH: no visible binding for global variable 'Ztb'
  opt.longPH: no visible binding for global variable 'y'
  opt.longPH: no visible binding for global variable 'sigma'
  opt.longPH: no visible binding for global variable 'id'
  opt.longPH: no visible binding for global variable 'lambda0'
  opt.longPH: no visible binding for global variable 'ind.T0'
  opt.longPH: no visible binding for global variable 'n'
  opt.longPH: no visible binding for global variable 'k'
  opt.longPH: no visible binding for global variable 'unq.indT'
  opt.longPH: no visible binding for global variable 'ind.L1'
  opt.longPH: no visible binding for global variable 'indT'
  opt.longPH: no visible binding for global variable 'd'
  opt.longPH: no visible binding for global variable 'p.byt'
  opt.longPH: no visible binding for global variable 'wGH'
  opt.longSplinePH: no visible binding for global variable 'X'
  opt.longSplinePH: no visible binding for global variable
  'parameterization'
  opt.longSplinePH: no visible binding for global variable 'Xtime'
  opt.longSplinePH: no visible binding for global variable 'Ztime.b'
  opt.longSplinePH: no visible binding for global variable 'Xs'
  opt.longSplinePH: no visible binding for global variable 'Zsb'
  opt.longSplinePH: no visible binding for global variable 'eta.tw2'
  opt.longSplinePH: no visible binding for global variable 'eta.tw1'
  opt.longSplinePH: no visible binding for global variable 'alpha'
  opt.longSplinePH: no visible binding for global variable 'Xtime.deriv'
  opt.longSplinePH: no visible binding for global variable 'indFixed'
  opt.longSplinePH: no visible binding for global variable
  'Ztime.b.deriv'
  opt.longSplinePH: no visible binding for global variable 'Xs.deriv'
  opt.longSplinePH: no visible binding for global variable 'Zsb.deriv'
  opt.longSplinePH: no visible binding for global variable 'Dalpha'
  opt.longSplinePH: no visible binding for global variable 'Ztb'
  opt.longSplinePH: no visible binding for global variable 'y'
  opt.longSplinePH: no visible binding for global variable 'sigma'
  opt.longSplinePH: no visible binding for global variable 'id'
  opt.longSplinePH: no visible binding for global variable 'P'
  opt.longSplinePH: no visible binding for global variable 'wk'
  opt.longSplinePH: no visible binding for global variable 'eta.ws'
  opt.longSplinePH: no visible binding for global variable 'id.GK'
  opt.longSplinePH: no visible binding for global variable 'd'
  opt.longSplinePH: no visible binding for global variable 'p.byt'
  opt.longSplinePH: no visible binding for global variable 'wGH'
  opt.longWB: no visible binding for global variable 'X'
  opt.longWB: no visible binding for global variable 'parameterization'
  opt.longWB: no visible binding for global variable 'Xtime'
  opt.longWB: no visible binding for global variable 'Ztime.b'
  opt.longWB: no visible binding for global variable 'Xs'
  opt.longWB: no visible binding for global variable 'Zsb'
  opt.longWB: no visible binding for global variable 'eta.tw'
  opt.longWB: no visible binding for global variable 'alpha'
  opt.longWB: no visible binding for global variable 'Xtime.deriv'
  opt.longWB: no visible binding for global variable 'indFixed'
  opt.longWB: no visible binding for global variable 'Ztime.b.deriv'
  opt.longWB: no visible binding for global variable 'Xs.deriv'
  opt.longWB: no visible binding for global variable 'Zsb.deriv'
  opt.longWB: no visible binding for global variable 'Dalpha'
  opt.longWB: no visible binding for global variable 'Ztb'
  opt.longWB: no visible binding for global variable 'y'
  opt.longWB: no visible binding for global variable 'sigma'
  opt.longWB: no visible binding for global variable 'id'
  opt.longWB: no visible binding for global variable 'sigma.t'
  opt.longWB: no visible binding for global variable 'logT'
  opt.longWB: no visible binding for global variable 'P'
  opt.longWB: no visible binding for global variable 'wk'
  opt.longWB: no visible binding for global variable 'log.st'
  opt.longWB: no visible binding for global variable 'id.GK'
  opt.longWB: no visible binding for global variable 'd'
  opt.longWB: no visible binding for global variable 'p.byt'
  opt.longWB: no visible binding for global variable 'wGH'
  opt.survAFTWB: no visible binding for global variable 'list.thetas'
  opt.survAFTWB: no visible binding for global variable 'scaleWB'
  opt.survAFTWB: no visible binding for global variable 'WW'
  opt.survAFTWB: no visible binding for global variable
  'parameterization'
  opt.survAFTWB: no visible binding for global variable 'Y'
  opt.survAFTWB: no visible binding for global variable 'Y.deriv'
  opt.survAFTWB: no visible binding for global variable 'Ys'
  opt.survAFTWB: no visible binding for global variable 'Ys.deriv'
  opt.survAFTWB: no visible binding for global variable 'P'
  opt.survAFTWB: no visible binding for global variable 'wk'
  opt.survAFTWB: no visible binding for global variable 'id.GK'
  opt.survAFTWB: no visible binding for global variable 'd'
  opt.survAFTWB: no visible binding for global variable 'p.byt'
  opt.survAFTWB: no visible binding for global variable 'wGH'
  opt.survPC: no visible binding for global variable 'list.thetas'
  opt.survPC: no visible binding for global variable 'WW'
  opt.survPC: no visible binding for global variable 'parameterization'
  opt.survPC: no visible binding for global variable 'Y'
  opt.survPC: no visible binding for global variable 'Y.deriv'
  opt.survPC: no visible binding for global variable 'Ys'
  opt.survPC: no visible binding for global variable 'Ys.deriv'
  opt.survPC: no visible binding for global variable 'ind.D'
  opt.survPC: no visible binding for global variable 'ind.K'
  opt.survPC: no visible binding for global variable 'wkP'
  opt.survPC: no visible binding for global variable 'id.GK'
  opt.survPC: no visible binding for global variable 'd'
  opt.survPC: no visible binding for global variable 'p.byt'
  opt.survPC: no visible binding for global variable 'wGH'
  opt.survPH: no visible binding for global variable 'ncww'
  opt.survPH: no visible binding for global variable 'WW'
  opt.survPH: no visible binding for global variable 'n'
  opt.survPH: no visible binding for global variable 'Y'
  opt.survPH: no visible binding for global variable 'Y2'
  opt.survPH: no visible binding for global variable 'lambda0'
  opt.survPH: no visible binding for global variable 'ind.T0'
  opt.survPH: no visible binding for global variable 'k'
  opt.survPH: no visible binding for global variable 'unq.indT'
  opt.survPH: no visible binding for global variable 'ind.L1'
  opt.survPH: no visible binding for global variable 'indT'
  opt.survPH: no visible binding for global variable 'd'
  opt.survPH: no visible binding for global variable 'p.byt'
  opt.survPH: no visible binding for global variable 'wGH'
  opt.survSplinePH: no visible binding for global variable 'list.thetas'
  opt.survSplinePH: no visible binding for global variable 'W1'
  opt.survSplinePH: no visible binding for global variable 'n'
  opt.survSplinePH: no visible binding for global variable 'W2'
  opt.survSplinePH: no visible binding for global variable
  'parameterization'
  opt.survSplinePH: no visible binding for global variable 'Y'
  opt.survSplinePH: no visible binding for global variable 'Y.deriv'
  opt.survSplinePH: no visible binding for global variable 'Ys'
  opt.survSplinePH: no visible binding for global variable 'Ys.deriv'
  opt.survSplinePH: no visible binding for global variable 'W2s'
  opt.survSplinePH: no visible binding for global variable 'P'
  opt.survSplinePH: no visible binding for global variable 'wk'
  opt.survSplinePH: no visible binding for global variable 'id.GK'
  opt.survSplinePH: no visible binding for global variable 'd'
  opt.survSplinePH: no visible binding for global variable 'p.byt'
  opt.survSplinePH: no visible binding for global variable 'wGH'
  opt.survWB: no visible binding for global variable 'list.thetas'
  opt.survWB: no visible binding for global variable 'scaleWB'
  opt.survWB: no visible binding for global variable 'WW'
  opt.survWB: no visible binding for global variable 'parameterization'
  opt.survWB: no visible binding for global variable 'Y'
  opt.survWB: no visible binding for global variable 'Y.deriv'
  opt.survWB: no visible binding for global variable 'Ys'
  opt.survWB: no visible binding for global variable 'Ys.deriv'
  opt.survWB: no visible binding for global variable 'logT'
  opt.survWB: no visible binding for global variable 'P'
  opt.survWB: no visible binding for global variable 'wk'
  opt.survWB: no visible binding for global variable 'log.st'
  opt.survWB: no visible binding for global variable 'id.GK'
  opt.survWB: no visible binding for global variable 'd'
  opt.survWB: no visible binding for global variable 'p.byt'
  opt.survWB: no visible binding for global variable 'wGH'
  piecewiseAFTGH.fit: no visible binding for global variable 'nk'
  posterior.b: no visible binding for global variable 'eta.yxT'
  posterior.b: no visible binding for global variable 'Ztime.missO'
  posterior.b: no visible binding for global variable 'eta.tw'
  posterior.b: no visible binding for global variable 'alpha.new'
  posterior.b: no visible binding for global variable 'eta.yx'
  posterior.b: no visible binding for global variable 'Z.missO'
  posterior.b: no visible binding for global variable 'id3.miss'
  posterior.b: no visible binding for global variable 'y.missO'
  posterior.b: no visible binding for global variable 'sigma.new'
  posterior.b: no visible binding for global variable 'id.miss'
  posterior.b: no visible binding for global variable 'method'
  posterior.b: no visible binding for global variable 'n.missO'
  posterior.b: no visible binding for global variable 'object'
  posterior.b: no visible binding for global variable 'Xs.missO'
  posterior.b: no visible binding for global variable 'betas.new'
  posterior.b: no visible binding for global variable 'Zs.missO'
  posterior.b: no visible binding for global variable 'sigma.t.new'
  posterior.b: no visible binding for global variable 'logT.missO'
  posterior.b: no visible binding for global variable 'log.st.missO'
  posterior.b: no visible binding for global variable 'P.missO'
  posterior.b: no visible binding for global variable 'd.missO'
  posterior.b: no visible binding for global variable 'W2.missO'
  posterior.b: no visible binding for global variable 'gammas.bs.new'
  posterior.b: no visible binding for global variable 'W2s.missO'
  posterior.b: no visible binding for global variable 'id.GK'
  posterior.b: no visible binding for global variable 'xi.new'
  posterior.b: no visible binding for global variable 'ind.D.missO'
  posterior.b: no visible binding for global variable 'ind.K.missO'
  posterior.b: no visible binding for global variable 'wkP.missO'
  posterior.b: no visible binding for global variable 'gammas.new'
  posterior.b: no visible binding for global variable 'nk'
  posterior.b: no visible binding for global variable 'ncz'
  posterior.b: no visible binding for global variable 'D.new'
  posterior.b: no visible binding for global variable 'diag.D'
  posterior.b: no visible binding for global variable 'k'
  simulate.jointModel: no visible binding for global variable 'data.id'
  splinePHLaplace.fit: no visible binding for global variable 'Zs'
  splinePHLaplace.fit: no visible binding for global variable 'Xs'
  splinePHLaplace.fit: no visible binding for global variable 'eta.tw'
  splinePHLaplace.fit: no visible binding for global variable 'ncww'
  splinePHLaplace.fit: no visible binding for global variable 'SclongCH'
  splinePHLaplace.fit: no visible global function definition for
  'SclongCH'
  splinePHLaplace.fit: no visible global function definition for
  'ScsurvCH'
  splinePHLaplace.fit: no visible binding for global variable 'ScsurvCH'
  splinePHLaplace.fit: no visible global function definition for
  'update.bCH'
  splinePHLaplace.fit: no visible global function definition for
  'LogLik.chLaplace'
  splinePHLaplace.fit: no visible binding for global variable
  'LogLik.chLaplace'
  splinePHLaplace.fit: no visible binding for global variable
  'Score.chLaplace'
  splinePHLaplace.fit: no visible binding for global variable 'kn'
  update.logLik.Laplace: no visible binding for global variable 'n'
  update.logLik.Laplace: no visible binding for global variable 'X'
  update.logLik.Laplace: no visible binding for global variable 'Xtime'
  update.logLik.Laplace: no visible binding for global variable 'Xs'
  update.logLik.Laplace: no visible binding for global variable 'W1'
  update.logLik.Laplace: no visible binding for global variable 'W2'
  update.logLik.Laplace: no visible binding for global variable 'W2s'
  update.logLik.Laplace: no visible binding for global variable 'ncz'
  update.logLik.Laplace: no visible binding for global variable 'id'
  update.logLik.Laplace: no visible binding for global variable 'id.GK'
  update.logLik.Laplace: no visible binding for global variable 'y'
  update.logLik.Laplace: no visible binding for global variable 'Z'
  update.logLik.Laplace: no visible binding for global variable 'Ztime'
  update.logLik.Laplace: no visible binding for global variable 'Zs'
  update.logLik.Laplace: no visible binding for global variable 'logT'
  update.logLik.Laplace: no visible binding for global variable 'P'
  update.logLik.Laplace: no visible binding for global variable 'new.b'
  update.logLik.Laplace: no visible binding for global variable 'ni'
  update.logLik.Laplace: no visible binding for global variable 'GKk'
  update.logLik.Laplace: no visible binding for global variable 'd'
  update.logLik.Laplace: no visible binding for global variable 'wk'
  update.logLik.Laplace: no visible binding for global variable 'diag.D'
  update.logLik.Laplace: no visible binding for global variable
  'cons.logLik'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK