• using R version 2.15.0 Patched (2012-05-26 r59446)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘vegan/DESCRIPTION’ ... OK
• this is package ‘vegan’ version ‘2.0-3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘vegan’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [67s/76s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [12s/14s] OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  al/texlive/2011/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
  (/usr/local/texlive/2011/texmf-dist/tex/latex/ae/t1aess.fd)
  
  LaTeX Font Warning: Font shape `T1/fi4/m/sl' undefined
  (Font) using `T1/fi4/m/n' instead on input line 80.
  
  
  Overfull \hbox (5.47499pt too wide) has occurred while \output is active
  \T1/aer/m/n/10.95 2 []
  [2
  ./intro-vegan.tex:126: pdfTeX error (ext4): \pdfendlink ended up in different n
  esting level than \pdfstartlink.
  \AtBegShi@Output ...ipout \box \AtBeginShipoutBox
  \fi \fi
  l.126 \begin{Sinput}
  
  ./intro-vegan.tex:126: ==> Fatal error occurred, no output PDF file produced!
  Transcript written on intro-vegan.log.
  /usr/local/bin/texi2dvi: pdflatex exited with bad status, quitting.
  *** Error code 1
  make: Fatal error: Command failed for target `intro-vegan.pdf'
  Current working directory /home/ripley/R/packages/tests32/vegan.Rcheck/vign_test/vegan/inst/doc
  Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/vegan.Rcheck/vign_test/vegan") :
  running 'make' failed
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/vegan.Rcheck/00check.log’
  for details.