- using R version 2.15.0 Patched (2012-05-26 r59446)
- using platform: i386-pc-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘rgenoud/DESCRIPTION’ ... OK
- this is package ‘rgenoud’ version ‘5.7-3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘rgenoud’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘rgenoud/R/zzz.R’:
.onAttach calls:
cat(paste("## rgenoud (Version ", version, ", Build Date: ", BuildDate, ")\n", sep = ""))
cat("## See http://sekhon.berkeley.edu/rgenoud for additional documentation.\n")
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
.onAttach: warning in packageDescription("rgenoud", lib = rgenoudLib):
partial argument match of 'lib' to 'lib.loc'
genoud : gr: warning in assign("x", par, env = genoud.wrapper101.env):
partial argument match of 'env' to 'envir'
genoud : gr: warning in assign("helper", helper, env =
genoud.wrapper101.env): partial argument match of 'env' to 'envir'
genoud : gr: warning in assign("FiniteBadFitValue", FiniteBadFitValue,
env = genoud.wrapper101.env): partial argument match of 'env' to
'envir'
genoud_transform : gr: warning in assign("x", par, env =
genoud.wrapper101.env): partial argument match of 'env' to 'envir'
genoud_transform : gr: warning in assign("helper", helper, env =
genoud.wrapper101.env): partial argument match of 'env' to 'envir'
genoud_transform : gr: warning in assign("FiniteBadFitValue",
FiniteBadFitValue, env = genoud.wrapper101.env): partial argument
match of 'env' to 'envir'
genoud : fnLexicalSort: no visible binding for global variable ‘indx’
genoud: multiple local function definitions for ‘fn1.bfgs’ with
different formal arguments
genoud: multiple local function definitions for ‘gr1’ with different
formal arguments
genoud: multiple local function definitions for ‘hess.fn’ with
different formal arguments
genoud_transform : fnLexicalSort: no visible binding for global
variable ‘indx’
genoud_transform: multiple local function definitions for ‘fn1.bfgs’
with different formal arguments
genoud_transform: multiple local function definitions for ‘gr1’ with
different formal arguments
Found .Internal calls in the following functions:
‘genoud’ ‘genoud_transform’
with calls to .Internal functions
‘optimhess’
Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/ripley/R/Lib32/rgenoud/libs/rgenoud.so’:
Found ‘exit’, possibly from ‘exit’ (C)
Object: ‘evaluate.o’
Found ‘printf’, possibly from ‘printf’ (C)
Object: ‘gradient.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking installed files from ‘inst/doc’ ... NOTE
The following directories should probably not be installed:
‘Figures’
Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- checking examples ... [10s/10s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [21s/26s] OK
Running ‘tests.R’ [21s/25s]
Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...11c11
< Sat May 26 17:24:39 2012
---
> Wed May 4 00:50:43 2011
169c169
< Sat May 26 17:24:40 2012
---
> Wed May 4 00:50:44 2011
198c198
< Sat May 26 17:24:40 2012
---
> Wed May 4 00:50:44 2011
356c356
< Sat May 26 17:24:42 2012
---
> Wed May 4 00:50:46 2011
392c392
< Sat May 26 17:24:42 2012
---
> Wed May 4 00:50:46 2011
550,551c550,551
< Sat May 26 17:24:45 2012
< Total run time : 0 hours 0 minutes and 3 seconds
---
> Wed May 4 00:50:48 2011
> Total run time : 0 hours 0 minutes and 2 seconds
600c600
< Sat May 26 17:24:45 2012
---
> Wed May 4 00:50:48 2011
822,823c822,823
< Sat May 26 17:25:03 2012
< Total run time : 0 hours 0 minutes and 18 seconds
---
> Wed May 4 00:50:56 2011
> Total run time : 0 hours 0 minutes and 8 seconds
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... [10s/20s] OK
- checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
‘/home/ripley/R/packages/tests32/rgenoud.Rcheck/00check.log’
for details.