• using R version 2.15.0 Patched (2012-05-26 r59446)
  • using platform: i386-pc-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘intamap/DESCRIPTION’ ... OK
  • this is package ‘intamap’ version ‘1.3-11’
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Package which this enhances but not available for checking: ‘psgp’
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for .dll and .exe files ... OK
  • checking whether package ‘intamap’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    jpdf_old : erfc: warning in pnorm(x * sqrt(2), lower = FALSE): partial
    argument match of 'lower' to 'lower.tail'
    timeSampling: warning in generateRandomObject(obsInterv[i],
    predInterv[1], FUN = FUN, formulaS = formulaString, class = class,
    ...): partial argument match of 'formulaS' to 'formulaString'
    predictTime: no visible binding for global variable ‘timeModels’
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking examples ... [33s/35s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [135s/162s] OK
    Running ‘anisotropyTest.R’
    Comparing ‘anisotropyTest.Rout’ to ‘anisotropyTest.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    12,15c5,8
    < Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
    > Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008
    > Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj
    19d11
    < The following object(s) are masked from 'package:evd':
    20a13,14
    > The following object(s) are masked from package:evd :
    >
    106,107c100,101
    < 1 Nug 0.0148462 0.000000
    < 2 Sph 0.6299043 0.634356
    ---
    > 1 Nug 0.01484620 0.000000
    > 2 Sph 0.62990427 0.634356
    187c181
    < [1,] 103.368 161.6921 1.593826
    ---
    > [1,] 103.3680 161.6921 1.593826
    257c251
    < 1st Qu.: 20626 1st Qu.:136146 1st Qu.:142.4 1st Qu.:17222
    ---
    > 1st Qu.: 20626 1st Qu.:136147 1st Qu.:142.4 1st Qu.:17222
    Running ‘block.R’ [31s/40s]
    Comparing ‘block.Rout’ to ‘block.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    12,15c5,8
    < Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
    > Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008
    > Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj
    19d11
    < The following object(s) are masked from 'package:evd':
    20a13,14
    > The following object(s) are masked from package:evd :
    >
    86c80
    < 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020855
    ---
    > 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020854
    92,97c86,91
    < Min. :0.00000 Min. :0.0000 Min. :4.577 Min. :0.0000
    < 1st Qu.:0.04287 1st Qu.:0.1562 1st Qu.:5.016 1st Qu.:0.0117
    < Median :0.38354 Median :0.6165 Median :5.419 Median :0.1067
    < Mean :0.48239 Mean :0.5176 Mean :5.468 Mean :0.1486
    < 3rd Qu.:0.84382 3rd Qu.:0.9571 3rd Qu.:5.854 3rd Qu.:0.2098
    < Max. :1.00000 Max. :1.0000 Max. :6.907 Max. :0.6902
    ---
    > Min. :5.546e-11 Min. :2.280e-09 Min. :4.577 Min. :0.0000
    > 1st Qu.:4.287e-02 1st Qu.:1.562e-01 1st Qu.:5.016 1st Qu.:0.0117
    > Median :3.835e-01 Median :6.165e-01 Median :5.419 Median :0.1067
    > Mean :4.824e-01 Mean :5.176e-01 Mean :5.468 Mean :0.1486
    > 3rd Qu.:8.438e-01 3rd Qu.:9.571e-01 3rd Qu.:5.854 3rd Qu.:0.2098
    > Max. :1.000e+00 Max. :1.000e+00 Max. :6.907 Max. :0.6902
    100c94
    < 1st Qu.:0.0005133 1st Qu.:6.764 1st Qu.:0.08598 1st Qu.:4.464
    ---
    > 1st Qu.:0.0005133 1st Qu.:6.764 1st Qu.:0.08599 1st Qu.:4.464
    103,104c97,98
    < 3rd Qu.:0.0481948 3rd Qu.:7.596 3rd Qu.:0.40690 3rd Qu.:5.094
    < Max. :0.0945648 Max. :8.351 Max. :0.68392 Max. :5.946
    ---
    > 3rd Qu.:0.0481948 3rd Qu.:7.595 3rd Qu.:0.40690 3rd Qu.:5.094
    > Max. :0.0945648 Max. :8.351 Max. :0.68391 Max. :5.946
    Running ‘idw.R’
    Comparing ‘idw.Rout’ to ‘idw.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    13,15c6,8
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    Running ‘interpolate.R’ [31s/33s]
    Comparing ‘interpolate.Rout’ to ‘interpolate.Rout.save’ ...5,11d4
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    14,16c7,9
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    30c23
    < R 2012-05-26 16:08:14 interpolating 155 observations, 3103 prediction locations
    ---
    > R 2011-02-28 17:27:00 interpolating 155 observations, 3103 prediction locations
    39c32
    < 2: closing unused connection 3 (/tmp/RtmpNxNBcS/file17dd18323b2a)
    ---
    > 2: closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file2714278f)
    46c39
    < 3rd Qu.:180580 3rd Qu.:332140 3rd Qu.: 544.9 3rd Qu.: 69336
    ---
    > 3rd Qu.:180580 3rd Qu.:332140 3rd Qu.: 544.9 3rd Qu.: 69337
    53c46
    < 3rd Qu.: 618.9 3rd Qu.: 643.0 3rd Qu.: 654.8 3rd Qu.: 582.3
    ---
    > 3rd Qu.: 618.8 3rd Qu.: 643.0 3rd Qu.: 654.8 3rd Qu.: 582.3
    71c64
    < R 2012-05-26 16:08:29 interpolating 155 observations, 3103 prediction locations
    ---
    > R 2011-02-28 17:27:16 interpolating 155 observations, 3103 prediction locations
    411c404
    < R 2012-05-26 16:08:34 interpolating 155 observations, 3103 prediction locations
    ---
    > R 2011-02-28 17:27:19 interpolating 155 observations, 3103 prediction locations
    423c416
    < closing unused connection 3 (/tmp/RtmpNxNBcS/file17dd56eb811)
    ---
    > closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file3dce117c)
    436c429
    < R 2012-05-26 16:08:40 interpolating 30 observations, 24 prediction locations
    ---
    > R 2011-02-28 17:27:21 interpolating 30 observations, 24 prediction locations
    443c436
    < R 2012-05-26 16:08:42 interpolating 30 observations, 24 prediction locations
    ---
    > R 2011-02-28 17:27:23 interpolating 30 observations, 24 prediction locations
    462,467c455,460
    < Min. :179283 Min. :330139 Min. : 141 Min. : 0
    < 1st Qu.:179753 1st Qu.:330765 1st Qu.: 231 1st Qu.: 6007
    < Median :180222 Median :331704 Median : 528 Median : 655114
    < Mean :180222 Mean :331704 Mean : 16670219 Mean : 39155822
    < 3rd Qu.:180691 3rd Qu.:332642 3rd Qu.: 4838 3rd Qu.:100000000
    < Max. :181161 Max. :333268 Max. :100000000 Max. :100000000
    ---
    > Min. :179283 Min. :330139 Min. :1.409e+02 Min. : 0
    > 1st Qu.:179753 1st Qu.:330765 1st Qu.:2.314e+02 1st Qu.: 6007
    > Median :180222 Median :331704 Median :5.278e+02 Median : 655114
    > Mean :180222 Mean :331704 Mean :1.667e+07 Mean : 39155822
    > 3rd Qu.:180691 3rd Qu.:332642 3rd Qu.:4.838e+03 3rd Qu.:100000000
    > Max. :181161 Max. :333268 Max. :1.000e+08 Max. :100000000
    469,474c462,467
    < Min. :0.0000402 Min. : 131.0
    < 1st Qu.:0.0056347 1st Qu.: 167.9
    < Median :0.0829580 Median : 253.7
    < Mean :0.1653267 Mean : 439.5
    < 3rd Qu.:0.2797628 3rd Qu.: 572.1
    < Max. :0.6133520 Max. :1427.6
    ---
    > Min. :4.021e-05 Min. : 131.0
    > 1st Qu.:5.635e-03 1st Qu.: 167.9
    > Median :8.296e-02 Median : 253.7
    > Mean :1.653e-01 Mean : 439.5
    > 3rd Qu.:2.798e-01 3rd Qu.: 572.1
    > Max. :6.134e-01 Max. :1427.6
    Running ‘interpolateBlock.R’
    Comparing ‘interpolateBlock.Rout’ to ‘interpolateBlock.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    13,15c6,8
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    36c29
    < R 2012-05-26 16:08:48 interpolating 155 observations, 48 prediction locations
    ---
    > R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations
    79c72
    < R 2012-05-26 16:08:49 interpolating 155 observations, 48 prediction locations
    ---
    > R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations
    87c80
    < 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020855
    ---
    > 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020854
    101c94
    < [1] 0.0162806
    ---
    > [1] 0.01628060
    Running ‘javaR.R’
    Comparing ‘javaR.Rout’ to ‘javaR.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    13,15c6,8
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    63,68c56,61
    < Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.09789
    < 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.14345
    < Median :4022423 Median :3104617 Median :5.675 Median :0.33215
    < Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.39523
    < 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.64199
    < Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.78320
    ---
    > Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.0979
    > 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.1435
    > Median :4022423 Median :3104617 Median :5.675 Median :0.3322
    > Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.3952
    > 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.6420
    > Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.7832
    71c64
    < 1st Qu.:0.136987 1st Qu.:0.2135848 1st Qu.:4.641
    ---
    > 1st Qu.:0.136987 1st Qu.:0.2135847 1st Qu.:4.641
    Running ‘linearVariogram.R’
    Comparing ‘linearVariogram.Rout’ to ‘linearVariogram.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    13,15c6,8
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    Running ‘minimal.R’
    Comparing ‘minimal.Rout’ to ‘minimal.Rout.save’ ...4,10d3
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    13,15c6,8
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    64,65c57,58
    < x 178460 181540
    < y 329620 333740
    ---
    > x 178440 181560
    > y 329600 333760
    Running ‘transGaussian.R’
    Comparing ‘transGaussian.Rout’ to ‘transGaussian.Rout.save’ ...5,11d4
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    14,16c7,9
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    31c24
    < R 2012-05-26 16:09:07 interpolating 155 observations, 3103 prediction locations
    ---
    > R 2011-02-28 17:22:38 interpolating 155 observations, 3103 prediction locations
    49c42
    < closing unused connection 3 (/tmp/Rtmp4yK7Q7/file3dc05ede50b7)
    ---
    > closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\Rtmph7f4zb\file1f9c1f20)
    Running ‘unbiased.R’ [37s/46s]
    Comparing ‘unbiased.Rout’ to ‘unbiased.Rout.save’ ...5,11d4
    <
    < Attaching package: 'zoo'
    <
    < The following object(s) are masked from 'package:base':
    <
    < as.Date, as.Date.numeric
    <
    14,16c7,9
    < Path to GDAL shared files: /usr/local/share/gdal
    < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
    < Path to PROJ.4 shared files: (autodetected)
    ---
    > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
    > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
    > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
    65,70c58,63
    < Min. :5.050 Min. :5.207 Min. :0.000000
    < 1st Qu.:5.771 1st Qu.:6.101 1st Qu.:0.002605
    < Median :6.074 Median :6.665 Median :0.054342
    < Mean :6.229 Mean :6.483 Mean :0.143007
    < 3rd Qu.:6.637 3rd Qu.:6.871 3rd Qu.:0.234089
    < Max. :7.759 Max. :7.604 Max. :0.843378
    ---
    > Min. :5.050 Min. :5.207 Min. :9.661e-10
    > 1st Qu.:5.771 1st Qu.:6.101 1st Qu.:2.605e-03
    > Median :6.074 Median :6.665 Median :5.434e-02
    > Mean :6.229 Mean :6.483 Mean :1.430e-01
    > 3rd Qu.:6.637 3rd Qu.:6.871 3rd Qu.:2.341e-01
    > Max. :7.759 Max. :7.604 Max. :8.434e-01
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    ‘/home/ripley/R/packages/tests32/intamap.Rcheck/00check.log’
    for details.