- using R version 2.15.0 Patched (2012-05-26 r59446)
- using platform: i386-pc-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘intamap/DESCRIPTION’ ... OK
- this is package ‘intamap’ version ‘1.3-11’
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘psgp’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘intamap’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
jpdf_old : erfc: warning in pnorm(x * sqrt(2), lower = FALSE): partial
argument match of 'lower' to 'lower.tail'
timeSampling: warning in generateRandomObject(obsInterv[i],
predInterv[1], FUN = FUN, formulaS = formulaString, class = class,
...): partial argument match of 'formulaS' to 'formulaString'
predictTime: no visible binding for global variable ‘timeModels’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [33s/35s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [135s/162s] OK
Running ‘anisotropyTest.R’
Comparing ‘anisotropyTest.Rout’ to ‘anisotropyTest.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
12,15c5,8
< Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
> Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008
> Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj
19d11
< The following object(s) are masked from 'package:evd':
20a13,14
> The following object(s) are masked from package:evd :
>
106,107c100,101
< 1 Nug 0.0148462 0.000000
< 2 Sph 0.6299043 0.634356
---
> 1 Nug 0.01484620 0.000000
> 2 Sph 0.62990427 0.634356
187c181
< [1,] 103.368 161.6921 1.593826
---
> [1,] 103.3680 161.6921 1.593826
257c251
< 1st Qu.: 20626 1st Qu.:136146 1st Qu.:142.4 1st Qu.:17222
---
> 1st Qu.: 20626 1st Qu.:136147 1st Qu.:142.4 1st Qu.:17222
Running ‘block.R’ [31s/40s]
Comparing ‘block.Rout’ to ‘block.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
12,15c5,8
< Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
> Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008
> Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj
19d11
< The following object(s) are masked from 'package:evd':
20a13,14
> The following object(s) are masked from package:evd :
>
86c80
< 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020855
---
> 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020854
92,97c86,91
< Min. :0.00000 Min. :0.0000 Min. :4.577 Min. :0.0000
< 1st Qu.:0.04287 1st Qu.:0.1562 1st Qu.:5.016 1st Qu.:0.0117
< Median :0.38354 Median :0.6165 Median :5.419 Median :0.1067
< Mean :0.48239 Mean :0.5176 Mean :5.468 Mean :0.1486
< 3rd Qu.:0.84382 3rd Qu.:0.9571 3rd Qu.:5.854 3rd Qu.:0.2098
< Max. :1.00000 Max. :1.0000 Max. :6.907 Max. :0.6902
---
> Min. :5.546e-11 Min. :2.280e-09 Min. :4.577 Min. :0.0000
> 1st Qu.:4.287e-02 1st Qu.:1.562e-01 1st Qu.:5.016 1st Qu.:0.0117
> Median :3.835e-01 Median :6.165e-01 Median :5.419 Median :0.1067
> Mean :4.824e-01 Mean :5.176e-01 Mean :5.468 Mean :0.1486
> 3rd Qu.:8.438e-01 3rd Qu.:9.571e-01 3rd Qu.:5.854 3rd Qu.:0.2098
> Max. :1.000e+00 Max. :1.000e+00 Max. :6.907 Max. :0.6902
100c94
< 1st Qu.:0.0005133 1st Qu.:6.764 1st Qu.:0.08598 1st Qu.:4.464
---
> 1st Qu.:0.0005133 1st Qu.:6.764 1st Qu.:0.08599 1st Qu.:4.464
103,104c97,98
< 3rd Qu.:0.0481948 3rd Qu.:7.596 3rd Qu.:0.40690 3rd Qu.:5.094
< Max. :0.0945648 Max. :8.351 Max. :0.68392 Max. :5.946
---
> 3rd Qu.:0.0481948 3rd Qu.:7.595 3rd Qu.:0.40690 3rd Qu.:5.094
> Max. :0.0945648 Max. :8.351 Max. :0.68391 Max. :5.946
Running ‘idw.R’
Comparing ‘idw.Rout’ to ‘idw.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
13,15c6,8
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
Running ‘interpolate.R’ [31s/33s]
Comparing ‘interpolate.Rout’ to ‘interpolate.Rout.save’ ...5,11d4
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
14,16c7,9
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
30c23
< R 2012-05-26 16:08:14 interpolating 155 observations, 3103 prediction locations
---
> R 2011-02-28 17:27:00 interpolating 155 observations, 3103 prediction locations
39c32
< 2: closing unused connection 3 (/tmp/RtmpNxNBcS/file17dd18323b2a)
---
> 2: closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file2714278f)
46c39
< 3rd Qu.:180580 3rd Qu.:332140 3rd Qu.: 544.9 3rd Qu.: 69336
---
> 3rd Qu.:180580 3rd Qu.:332140 3rd Qu.: 544.9 3rd Qu.: 69337
53c46
< 3rd Qu.: 618.9 3rd Qu.: 643.0 3rd Qu.: 654.8 3rd Qu.: 582.3
---
> 3rd Qu.: 618.8 3rd Qu.: 643.0 3rd Qu.: 654.8 3rd Qu.: 582.3
71c64
< R 2012-05-26 16:08:29 interpolating 155 observations, 3103 prediction locations
---
> R 2011-02-28 17:27:16 interpolating 155 observations, 3103 prediction locations
411c404
< R 2012-05-26 16:08:34 interpolating 155 observations, 3103 prediction locations
---
> R 2011-02-28 17:27:19 interpolating 155 observations, 3103 prediction locations
423c416
< closing unused connection 3 (/tmp/RtmpNxNBcS/file17dd56eb811)
---
> closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file3dce117c)
436c429
< R 2012-05-26 16:08:40 interpolating 30 observations, 24 prediction locations
---
> R 2011-02-28 17:27:21 interpolating 30 observations, 24 prediction locations
443c436
< R 2012-05-26 16:08:42 interpolating 30 observations, 24 prediction locations
---
> R 2011-02-28 17:27:23 interpolating 30 observations, 24 prediction locations
462,467c455,460
< Min. :179283 Min. :330139 Min. : 141 Min. : 0
< 1st Qu.:179753 1st Qu.:330765 1st Qu.: 231 1st Qu.: 6007
< Median :180222 Median :331704 Median : 528 Median : 655114
< Mean :180222 Mean :331704 Mean : 16670219 Mean : 39155822
< 3rd Qu.:180691 3rd Qu.:332642 3rd Qu.: 4838 3rd Qu.:100000000
< Max. :181161 Max. :333268 Max. :100000000 Max. :100000000
---
> Min. :179283 Min. :330139 Min. :1.409e+02 Min. : 0
> 1st Qu.:179753 1st Qu.:330765 1st Qu.:2.314e+02 1st Qu.: 6007
> Median :180222 Median :331704 Median :5.278e+02 Median : 655114
> Mean :180222 Mean :331704 Mean :1.667e+07 Mean : 39155822
> 3rd Qu.:180691 3rd Qu.:332642 3rd Qu.:4.838e+03 3rd Qu.:100000000
> Max. :181161 Max. :333268 Max. :1.000e+08 Max. :100000000
469,474c462,467
< Min. :0.0000402 Min. : 131.0
< 1st Qu.:0.0056347 1st Qu.: 167.9
< Median :0.0829580 Median : 253.7
< Mean :0.1653267 Mean : 439.5
< 3rd Qu.:0.2797628 3rd Qu.: 572.1
< Max. :0.6133520 Max. :1427.6
---
> Min. :4.021e-05 Min. : 131.0
> 1st Qu.:5.635e-03 1st Qu.: 167.9
> Median :8.296e-02 Median : 253.7
> Mean :1.653e-01 Mean : 439.5
> 3rd Qu.:2.798e-01 3rd Qu.: 572.1
> Max. :6.134e-01 Max. :1427.6
Running ‘interpolateBlock.R’
Comparing ‘interpolateBlock.Rout’ to ‘interpolateBlock.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
13,15c6,8
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
36c29
< R 2012-05-26 16:08:48 interpolating 155 observations, 48 prediction locations
---
> R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations
79c72
< R 2012-05-26 16:08:49 interpolating 155 observations, 48 prediction locations
---
> R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations
87c80
< 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020855
---
> 1st Qu.:179485 1st Qu.:330829 1st Qu.:5.481 1st Qu.:0.020854
101c94
< [1] 0.0162806
---
> [1] 0.01628060
Running ‘javaR.R’
Comparing ‘javaR.Rout’ to ‘javaR.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
13,15c6,8
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
63,68c56,61
< Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.09789
< 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.14345
< Median :4022423 Median :3104617 Median :5.675 Median :0.33215
< Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.39523
< 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.64199
< Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.78320
---
> Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.0979
> 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.1435
> Median :4022423 Median :3104617 Median :5.675 Median :0.3322
> Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.3952
> 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.6420
> Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.7832
71c64
< 1st Qu.:0.136987 1st Qu.:0.2135848 1st Qu.:4.641
---
> 1st Qu.:0.136987 1st Qu.:0.2135847 1st Qu.:4.641
Running ‘linearVariogram.R’
Comparing ‘linearVariogram.Rout’ to ‘linearVariogram.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
13,15c6,8
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
Running ‘minimal.R’
Comparing ‘minimal.Rout’ to ‘minimal.Rout.save’ ...4,10d3
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
13,15c6,8
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
64,65c57,58
< x 178460 181540
< y 329620 333740
---
> x 178440 181560
> y 329600 333760
Running ‘transGaussian.R’
Comparing ‘transGaussian.Rout’ to ‘transGaussian.Rout.save’ ...5,11d4
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
14,16c7,9
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
31c24
< R 2012-05-26 16:09:07 interpolating 155 observations, 3103 prediction locations
---
> R 2011-02-28 17:22:38 interpolating 155 observations, 3103 prediction locations
49c42
< closing unused connection 3 (/tmp/Rtmp4yK7Q7/file3dc05ede50b7)
---
> closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\Rtmph7f4zb\file1f9c1f20)
Running ‘unbiased.R’ [37s/46s]
Comparing ‘unbiased.Rout’ to ‘unbiased.Rout.save’ ...5,11d4
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
14,16c7,9
< Path to GDAL shared files: /usr/local/share/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: (autodetected)
---
> Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009
> Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj
65,70c58,63
< Min. :5.050 Min. :5.207 Min. :0.000000
< 1st Qu.:5.771 1st Qu.:6.101 1st Qu.:0.002605
< Median :6.074 Median :6.665 Median :0.054342
< Mean :6.229 Mean :6.483 Mean :0.143007
< 3rd Qu.:6.637 3rd Qu.:6.871 3rd Qu.:0.234089
< Max. :7.759 Max. :7.604 Max. :0.843378
---
> Min. :5.050 Min. :5.207 Min. :9.661e-10
> 1st Qu.:5.771 1st Qu.:6.101 1st Qu.:2.605e-03
> Median :6.074 Median :6.665 Median :5.434e-02
> Mean :6.229 Mean :6.483 Mean :1.430e-01
> 3rd Qu.:6.637 3rd Qu.:6.871 3rd Qu.:2.341e-01
> Max. :7.759 Max. :7.604 Max. :8.434e-01
- checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/home/ripley/R/packages/tests32/intamap.Rcheck/00check.log’
for details.