• using R version 2.15.0 Patched (2012-05-26 r59446)
  • using platform: i386-pc-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘gplots/DESCRIPTION’ ... OK
  • this is package ‘gplots’ version ‘2.10.1’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for .dll and .exe files ... OK
  • checking whether package ‘gplots’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    barplot2.default: warning in matrix(w.m, nc = NC): partial argument
    match of 'nc' to 'ncol'
    ooplot.default: warning in matrix(w.m, nc = NC): partial argument match
    of 'nc' to 'ncol'
    sinkplot: warning in exists(".sinkplot.conn", env = globalenv()):
    partial argument match of 'env' to 'envir'
    sinkplot: warning in get(".sinkplot.conn", env = globalenv()): partial
    argument match of 'env' to 'envir'
    sinkplot: warning in get(".sinkplot.data", env = globalenv()): partial
    argument match of 'env' to 'envir'
    sinkplot: warning in exists(".sinkplot.data", env = globalenv()):
    partial argument match of 'env' to 'envir'
    plotCI: multiple local function definitions for ‘myarrows’ with
    different formal arguments
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'boxplot.n':
    ‘boxplot.n’

    S3 methods shown with full name in documentation object 'plot.lm2':
    ‘plot.lm2’

    S3 methods shown with full name in documentation object 'qqnorm.aov':
    ‘qqnorm.aov’

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... WARNING
    ‘library’ or ‘require’ call not declared from: ‘MASS’
    ‘data(package=)’ call not declared from: ‘MASS’
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking examples ... ERROR
    Running examples in ‘gplots-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: ci2d
    > ### Title: Create 2-dimensional empirical confidence regions
    > ### Aliases: ci2d print.ci2d
    > ### Keywords: dplot hplot nonparametric
    >
    > ### ** Examples
    >
    > ####
    > ## Basic usage
    > ####
    > data(geyser, package="MASS")
    Error in find.package(package, lib.loc, verbose = verbose) :
    there is no package called ‘MASS’
    Calls: data -> find.package
    Execution halted