• using R version 2.15.0 Patched (2012-05-26 r59446)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘cem/DESCRIPTION’ ... OK
• this is package ‘cem’ version ‘1.0.142’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘cem’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘cem/R/zzz.R’:
  .onLoad calls:
  cat("\nHow to use CEM? Type vignette(\"cem\")\n")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  cemspace: warning in cem(treatment, data, cut = newcut, eval = FALSE):
  partial argument match of 'cut' to 'cutpoints'
  cemspace: warning in cem(treatment, data, cut = newcut, eval = FALSE):
  partial argument match of 'eval' to 'eval.imbalance'
  imbspace.plot : OnOK: warning in cem(obj$match$treatment, data = data[,
  c(obj$match$vars, obj$match$treatment)], cut = new.br, eval = FALSE):
  partial argument match of 'cut' to 'cutpoints'
  imbspace.plot : OnOK: warning in cem(obj$match$treatment, data = data[,
  c(obj$match$vars, obj$match$treatment)], cut = new.br, eval = FALSE):
  partial argument match of 'eval' to 'eval.imbalance'
  plot.cem.att: warning in factor(level, levels = c("negative", "zero",
  "positive"), ord = TRUE): partial argument match of 'ord' to
  'ordered'
  shift.cem: warning in cem.main(treatment = obj$treatment, data = data,
  drop = obj$drop, cut = new.br, k2k = obj$k2k): partial argument match
  of 'cut' to 'cutpoints'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files look like leftovers/mistakes:
  ‘copyRd.Rout’
  Please remove them from your package.
  The following files should probably not be installed:
  ‘JSS-paper.tex’, ‘Makefile’, ‘resprev.tex’, ‘upquote.sty’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [28s/29s] WARNING
  Found the following significant warnings:
  
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Warning: ‘parallel’ is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [30s/31s] OK
• checking re-building of vignette PDFs ... [61s/63s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/home/ripley/R/packages/tests32/cem.Rcheck/00check.log’
  for details.