- using R version 2.15.0 Patched (2012-05-26 r59446)
- using platform: i386-pc-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘assist/DESCRIPTION’ ... OK
- this is package ‘assist’ version ‘3.1.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘assist’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘assist/R/assist.R’:
.onLoad calls:
require(nlme)
Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.
slm: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
slm: warning in lme(formula, control = control, random = tmp1, corr =
correlation, weights = weights): partial argument match of 'corr' to
'correlation'
slm: warning in lme(formula, control = control, random = tmp1, corr =
correlation, weights = weights, data = slmData): partial argument
match of 'corr' to 'correlation'
snm: warning in exists(funcName[i], env = .env): partial argument match
of 'env' to 'envir'
snm: warning in eval(parse(text = funcName[i]), env = .env): partial
argument match of 'env' to 'envir'
snm: warning in assign(funcName[i], spline.f0[[i]], env = .env):
partial argument match of 'env' to 'envir'
snm: warning in assign(funcName[i], spline.f[[i]], env = .env): partial
argument match of 'env' to 'envir'
snm: warning in assign(funcName[i], oldF[[i]], env = .env): partial
argument match of 'env' to 'envir'
snr: warning in exists(funcName[i], env = .env): partial argument match
of 'env' to 'envir'
snr: warning in eval(parse(text = funcName[i]), env = .env): partial
argument match of 'env' to 'envir'
snr: warning in assign(funcName[i], spline.f[[i]], env = .env): partial
argument match of 'env' to 'envir'
snr: warning in assign(funcName[i], oldF[[i]], env = .env): partial
argument match of 'env' to 'envir'
ssr: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
ssr: warning in lme(formula, random = list(tmpGrp = pdIdent(~tmp.z -
1)), corr = correlation, weights = weights, data = lmeData): partial
argument match of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp = pdIdent(~tmp.z -
1)), corr = correlation, weights = weights): partial argument match
of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp =
pdBlocked(tmp.block)), corr = correlation, weights = weights, data =
lmeData): partial argument match of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp =
pdBlocked(tmp.block)), corr = correlation, weights = weights):
partial argument match of 'corr' to 'correlation'
plot.bCI: no visible global function definition for ‘xyplot’
slm: no visible binding for global variable ‘response’
snm: no visible global function definition for ‘matDiag’
ssr: no visible binding for global variable ‘response’
table2: no visible global function definition for ‘is.category’
table2: no visible global function definition for ‘which.na’
xyplot2: no visible global function definition for ‘xyplot’
xyplot2 : <anonymous>: no visible global function definition for
‘strip.default’
xyplot2 : <anonymous>: no visible global function definition for
‘panel.xyplot’
xyplot2 : <anonymous>: no visible global function definition for
‘panel.superpose’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'deviance.ssr':
‘deviance.ssr’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/ripley/R/Lib32/assist/libs/assist.so’:
Found ‘__f90_esfw’, possibly from ‘print’ (Fortran), ‘write’
(Fortran)
Object: ‘rkpk1.o’
Found ‘__f90_stop’, possibly from ‘stop’ (Fortran)
Objects: ‘gfmain.o’, ‘rkpk1.o’
Found ‘__f90_stop_char’, possibly from ‘stop’ (Fortran)
Object: ‘rkpk1.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking examples ... [32s/37s] OK
- checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
‘/home/ripley/R/packages/tests32/assist.Rcheck/00check.log’
for details.