• using R version 3.0.1 Patched (2013-05-18 r62762)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘SweaveListingUtils/DESCRIPTION’ ... OK
• this is package ‘SweaveListingUtils’ version ‘0.6.1’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SweaveListingUtils’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... OK
• checking differences from ‘SweaveListingUtils-Ex.Rout’ to ‘SweaveListingUtils-Ex.Rout.save’ ...
  0a1
  > > options(pager = "console")
  42c43
  < > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
  ---
  > > assign(".oldSearch", search(), pos = 'CheckExEnv')
  85c86
  < ... nothing discovered so far ...
  ---
  > ... nothing discovered so far ...>
  88d88
  < >
  523,538c523,539
  < morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,trans3d,%
  < topo.colors,tiff,terrain.colors,svg,setPS,%
  < setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,rgb2hsv,%
  < replayPlot,recordPlot,recordGraphics,quartzFonts,quartzFont,%
  < quartz.save,quartz.options,quartz,ps.options,postscriptFonts,%
  < png,pdfFonts,pdf.options,pdf,nclass.scott,%
  < nclass.Sturges,nclass.FD,n2mfrow,make.rgb,jpeg,%
  < is.raster,heat.colors,hcl,grey.colors,gray.colors,%
  < graphics.off,getGraphicsEventEnv,getGraphicsEvent,extendrange,embedFonts,%
  < deviceIsInteractive,devAskNewPage,dev.size,dev.set,dev.print,%
  < dev.prev,dev.off,dev.next,dev.new,dev.list,%
  < dev.interactive,dev.hold,dev.flush,dev.cur,dev.copy2pdf,%
  < dev.copy2eps,dev.copy,dev.control,dev.capture,dev.capabilities,%
  < densCols,convertColor,contourLines,colorspaces,colorRampPalette,%
  < colorRamp,colorConverter,col2rgb,cm.colors,check.options,%
  < cairo_ps,cairo_pdf,boxplot.stats,bmp,blues9,%
  ---
  > morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,windowsFonts,%
  > windowsFont,windows.options,windows,win.print,win.metafile,%
  > win.graph,trans3d,topo.colors,tiff,terrain.colors,%
  > svg,setPS,setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,%
  > savePlot,rgb2hsv,replayPlot,recordPlot,recordGraphics,%
  > ps.options,postscriptFonts,postscriptFont,png,pdfFonts,%
  > pdf.options,pdf,nclass.scott,nclass.Sturges,nclass.FD,%
  > n2mfrow,msgWindow,make.rgb,jpeg,is.raster,%
  > heat.colors,hcl,grey.colors,gray.colors,graphics.off,%
  > getGraphicsEventEnv,getGraphicsEvent,extendrange,embedFonts,deviceIsInteractive,%
  > devAskNewPage,dev.size,dev.set,dev.print,dev.prev,%
  > dev.off,dev.next,dev.new,dev.list,dev.interactive,%
  > dev.hold,dev.flush,dev.cur,dev.copy2pdf,dev.copy2eps,%
  > dev.copy,dev.control,dev.capture,dev.capabilities,densCols,%
  > convertColor,contourLines,colorspaces,colorRampPalette,colorRamp,%
  > colorConverter,col2rgb,cm.colors,check.options,cairo_ps,%
  > cairo_pdf,bringToTop,boxplot.stats,bmp,blues9,%
  540,541c541
  < X11Fonts,X11Font,X11.options,Type1Font,Hershey,%
  < CIDFont%
  ---
  > Type1Font,Hershey,CIDFont%
  548,583c548,588
  < morekeywords={[7]write.table,write.socket,write.csv2,write.csv,vignette,%
  < url.show,upgrade,update.packages,update.packageStatus,unzip,%
  < untar,unstack,type.convert,txtProgressBar,toLatex,%
  < toBibtex,timestamp,tar,tail.matrix,tail,%
  < summaryRprof,strOptions,str,stack,setTxtProgressBar,%
  < setRepositories,setBreakpoint,sessionInfo,select.list,savehistory,%
  < rtags,removeSource,remove.packages,relist,recover,%
  < readCitationFile,read.table,read.socket,read.fwf,read.fortran,%
  < read.delim2,read.delim,read.csv2,read.csv,read.DIF,%
  < rc.status,rc.settings,rc.options,rc.getOption,promptPackage,%
  < promptData,process.events,personList,person,packageVersion,%
  < packageStatus,packageName,packageDescription,package.skeleton,old.packages,%
  < object.size,nsl,news,new.packages,modifyList,%
  < mirror2html,memory.size,memory.limit,makeRweaveLatexCodeRunner,make.socket,%
  < make.packages.html,maintainer,lsf.str,ls.str,localeToCharset,%
  < loadhistory,limitedLabels,is.relistable,installed.packages,install.packages,%
  < history,help.start,help.search,help.request,head.matrix,%
  < head,globalVariables,glob2rx,getTxtProgressBar,getSrcref,%
  < getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getParseText,%
  < getParseData,getFromNamespace,getCRANmirrors,getAnywhere,formatUL,%
  < formatOL,flush.console,fixInNamespace,findLineNum,file_test,%
  < file.edit,dump.frames,download.packages,download.file,de.setup,%
  < de.restore,de.ncols,data.entry,create.post,count.fields,%
  < contrib.url,compareVersion,combn,close.socket,citeNatbib,%
  < cite,citation,citHeader,citFooter,citEntry,%
  < chooseCRANmirror,chooseBioCmirror,checkCRAN,capture.output,bug.report,%
  < browseVignettes,browseURL,browseEnv,bibentry,available.packages,%
  < assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,%
  < aspell_package_R_files,aspell_package_C_files,aspell,as.roman,as.relistable,%
  < as.personList,as.person,argsAnywhere,aregexec,alarm,%
  < adist,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
  < SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
  < RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
  < RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
  < Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
  < CRAN.packages%
  ---
  > morekeywords={[7]zip.unpack,writeClipboard,write.table,write.socket,write.csv2,%
  > write.csv,winProgressBar,winMenuNames,winMenuItems,winMenuDelItem,%
  > winMenuDel,winMenuAddItem,winMenuAdd,winDialogString,winDialog,%
  > win.version,vignette,url.show,upgrade,update.packages,%
  > update.packageStatus,unzip,untar,unstack,type.convert,%
  > txtProgressBar,toLatex,toBibtex,timestamp,tar,%
  > tail.matrix,tail,summaryRprof,strOptions,str,%
  > stack,shortPathName,setWindowTitle,setWinProgressBar,setTxtProgressBar,%
  > setStatusBar,setRepositories,setInternet2,setBreakpoint,sessionInfo,%
  > select.list,savehistory,rtags,removeSource,remove.packages,%
  > relist,recover,readRegistry,readClipboard,readCitationFile,%
  > read.table,read.socket,read.fwf,read.fortran,read.delim2,%
  > read.delim,read.csv2,read.csv,read.DIF,rc.status,%
  > rc.settings,rc.options,rc.getOption,promptPackage,promptData,%
  > process.events,personList,person,packageVersion,packageStatus,%
  > packageDescription,package.skeleton,old.packages,object.size,news,%
  > new.packages,modifyList,mirror2html,memory.size,memory.limit,%
  > makeRweaveLatexCodeRunner,make.socket,make.packages.html,maintainer,lsf.str,%
  > ls.str,localeToCharset,loadhistory,loadRconsole,limitedLabels,%
  > is.relistable,installed.packages,install.packages,history,help.start,%
  > help.search,help.request,head.matrix,head,globalVariables,%
  > glob2rx,getWindowsHandles,getWindowsHandle,getWindowTitle,getWinProgressBar,%
  > getTxtProgressBar,getSrcref,getSrcLocation,getSrcFilename,getSrcDirectory,%
  > getS3method,getParseText,getParseData,getIdentification,getFromNamespace,%
  > getClipboardFormats,getCRANmirrors,getAnywhere,formatUL,formatOL,%
  > flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
  > dump.frames,download.packages,download.file,de.setup,de.restore,%
  > de.ncols,data.entry,create.post,count.fields,contrib.url,%
  > compareVersion,combn,close.socket,citeNatbib,cite,%
  > citation,citHeader,citFooter,citEntry,chooseCRANmirror,%
  > chooseBioCmirror,choose.files,choose.dir,checkCRAN,capture.output,%
  > bug.report,browseVignettes,browseURL,browseEnv,bibentry,%
  > available.packages,assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,%
  > aspell_package_Rd_files,aspell_package_R_files,aspell_package_C_files,aspell,as.roman,%
  > as.relistable,as.personList,as.person,arrangeWindows,argsAnywhere,%
  > aregexec,alarm,adist,View,URLencode,%
  > URLdecode,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,%
  > Sweave,Stangle,RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,%
  > RweaveLatexOptions,RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,%
  > RtangleWritedoc,RtangleSetup,Rtangle,Rprofmem,Rprof,%
  > RSiteSearch,RShowDoc,Filters,DLL.version,CRAN.packages%
  652,658c657,663
  < classLabel,checkSlotAssignment,checkAtAssignment,cbind2,canCoerce,%
  < callNextMethod,callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,%
  < body<-,balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,%
  < as<-,allNames,allGenerics,addNextMethod,Summary,%
  < SignatureMethod,S3Part<-,S3Part,S3Class<-,S3Class,%
  < Quote,MethodsListSelect,MethodsList,MethodAddCoerce,Math2,%
  < Logic,Complex,Compare,Arith%
  ---
  > classLabel,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
  > callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
  > balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
  > allNames,allGenerics,addNextMethod,Summary,SignatureMethod,%
  > S3Part<-,S3Part,S3Class<-,S3Class,Quote,%
  > MethodsListSelect,MethodsList,MethodAddCoerce,Math2,Logic,%
  > Complex,Compare,Arith%
  684,790c689,796
  < summary.srcfile,summary.proc_time,summary.matrix,summary.factor,summary.default,%
  < summary.data.frame,summary.connection,summary.POSIXlt,summary.POSIXct,summary.Date,%
  < substring<-,substr<-,subset.matrix,subset.default,subset.data.frame,%
  < strwrap,strtrim,strtoi,strptime,strftime,%
  < storage.mode<-,storage.mode,stopifnot,stdout,stdin,%
  < stderr,standardGeneric,srcref,srcfilecopy,srcfilealias,%
  < srcfile,sprintf,split<-.default,split<-.data.frame,split<-,%
  < split.default,split.data.frame,split.POSIXct,split.Date,sort.list,%
  < sort.int,sort.default,sort.POSIXlt,solve.qr,solve.default,%
  < socketSelect,socketConnection,slice.index,sink.number,simplify2array,%
  < simpleWarning,simpleMessage,simpleError,simpleCondition,signalCondition,%
  < showConnections,shQuote,setTimeLimit,setSessionTimeLimit,setNamespaceInfo,%
  < setHook,set.seed,serialize,seq_len,seq_along,%
  < seq.int,seq.default,seq.POSIXt,seq.Date,seek.connection,%
  < seek,scale.default,saveRDS,save.image,sample.int,%
  < sQuote,rowsum.default,rowsum.data.frame,rownames<-,rowSums,%
  < rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,%
  < row.names.data.frame,row.names,round.POSIXt,round.Date,rev.default,%
  < retracemem,restartFormals,restartDescription,requireNamespace,replicate,%
  < rep_len,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
  < rep.POSIXct,rep.Date,removeTaskCallback,regmatches<-,regmatches,%
  < registerS3methods,registerS3method,regexec,reg.finalizer,readRenviron,%
  < readRDS,readLines,readChar,readBin,read.dcf,%
  < rcond,rbind.data.frame,rawToChar,rawToBits,rawShift,%
  < rawConnectionValue,rawConnection,raw,rapply,range.default,%
  < quarters.POSIXt,quarters.Date,quarters,qr.solve,qr.resid,%
  < qr.qy,qr.qty,qr.fitted,qr.default,qr.coef,%
  < qr.X,qr.R,qr.Q,pushBackLength,pushBack,%
  < psigamma,provideDimnames,prop.table,proc.time,print.warnings,%
  < print.table,print.summaryDefault,print.summary.table,print.srcref,print.srcfile,%
  < print.simple.list,print.rle,print.restart,print.proc_time,print.packageInfo,%
  < print.octmode,print.numeric_version,print.noquote,print.listof,print.libraryIQR,%
  < print.hexmode,print.function,print.factor,print.difftime,print.default,%
  < print.data.frame,print.connection,print.condition,print.by,print.POSIXlt,%
  < print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,%
  < print.DLLInfo,print.AsIs,prettyNum,pretty.default,pos.to.env,%
  < pmin.int,pmax.int,pipe,pi,path.package,%
  < path.expand,paste0,parseNamespaceFile,parent.frame,parent.env<-,%
  < parent.env,package_version,packageStartupMessage,packageHasNamespace,packageEvent,%
  < packBits,open.srcfilecopy,open.srcfilealias,open.srcfile,open.connection,%
  < open,on.exit,oldClass<-,oldClass,nzchar,%
  < numeric_version,normalizePath,norm,ngettext,new.env,%
  < namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,namespaceImport,namespaceExport,%
  < names<-.POSIXlt,names<-,names.POSIXlt,mostattributes<-,months.POSIXt,%
  < months.Date,months,month.name,month.abb,mode<-,%
  < mget,message,merge.default,merge.data.frame,memory.profile,%
  < memDecompress,memCompress,mem.limits,mean.difftime,mean.default,%
  < mean.POSIXlt,mean.POSIXct,mean.Date,max.col,match.fun,%
  < match.call,match.arg,mat.or.vec,margin.table,mapply,%
  < makeActiveBinding,make.unique,make.names,lower.tri,logb,%
  < lockEnvironment,lockBinding,loadingNamespaceInfo,loadedNamespaces,loadNamespace,%
  < list2env,list.files,list.dirs,library.dynam.unload,library.dynam,%
  < lfactorial,levels<-.factor,levels<-,levels.default,letters,%
  < length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,%
  < lazyLoad,labels.default,l10n_info,kappa.qr,kappa.lm,%
  < kappa.default,julian.POSIXt,julian.Date,julian,isdebugged,%
  < isatty,isTRUE,isSymmetric.matrix,isSymmetric,isSeekable,%
  < isS4,isRestart,isOpen,isNamespace,isIncomplete,%
  < isBaseNamespace,is.vector,is.unsorted,is.table,is.symbol,%
  < is.single,is.recursive,is.raw,is.qr,is.primitive,%
  < is.pairlist,is.package_version,is.ordered,is.object,is.numeric_version,%
  < is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,is.numeric,is.null,%
  < is.nan,is.name,is.na<-.factor,is.na<-.default,is.na<-,%
  < is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,is.na,is.matrix,%
  < is.logical,is.loaded,is.list,is.language,is.integer,%
  < is.infinite,is.function,is.finite,is.factor,is.expression,%
  < is.environment,is.element,is.double,is.data.frame,is.complex,%
  < is.character,is.call,is.atomic,is.array,is.R,%
  < invokeRestartInteractively,invokeRestart,inverse.rle,intToUtf8,intToBits,%
  < importIntoEnv,identity,identical,icuSetCollate,iconvlist,%
  < iconv,gzfile,gzcon,grepl,grepRaw,%
  < gregexpr,gettextf,gettext,getTaskCallbackNames,getSrcLines,%
  < getRversion,getNativeSymbolInfo,getNamespaceVersion,getNamespaceUsers,getNamespaceName,%
  < getNamespaceInfo,getNamespaceImports,getNamespaceExports,getNamespace,getLoadedDLLs,%
  < getHook,getExportedValue,getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,%
  < getDLLRegisteredRoutines,getConnection,getCallingDLLe,getCallingDLL,getAllConnections,%
  < gctorture2,gc.time,formatDL,format.summaryDefault,format.pval,%
  < format.packageInfo,format.octmode,format.numeric_version,format.libraryIQR,format.info,%
  < format.hexmode,format.factor,format.difftime,format.default,format.data.frame,%
  < format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
  < force,flush.connection,flush,findRestart,findPackageEnv,%
  < findInterval,find.package,file.symlink,file.show,file.rename,%
  < file.remove,file.path,file.link,file.info,file.exists,%
  < file.create,file.copy,file.choose,file.append,file.access,%
  < fifo,factorial,expm1,expand.grid,eval.parent,%
  < environmentName,environmentIsLocked,environment<-,env.profile,enquote,%
  < encodeString,enc2utf8,enc2native,emptyenv,eapply,%
  < dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,%
  < duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,%
  < droplevels,do.call,dir.create,dimnames<-.data.frame,dimnames<-,%
  < dimnames.data.frame,dim<-,dim.data.frame,difftime,diff.default,%
  < diff.POSIXt,diff.Date,diag<-,determinant.matrix,determinant,%
  < det,delayedAssign,default.stringsAsFactors,debugonce,data.matrix,%
  < data.frame,data.class,dQuote,cut.default,cut.POSIXt,%
  < cut.Date,contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,%
  < conditionCall,computeRestarts,comment<-,colnames<-,colSums,%
  < colMeans,closeAllConnections,close.srcfilealias,close.srcfile,close.connection,%
  < clearPushBack,class<-,chol.default,check_tzones,chartr,%
  < charToRaw,char.expand,cbind.data.frame,casefold,capabilities,%
  < callCC,c.numeric_version,c.noquote,c.POSIXlt,c.POSIXct,%
  < c.Date,bzfile,by.default,by.data.frame,browserText,%
  < browserSetDebug,browserCondition,bquote,body<-,bitwXor,%
  < bitwShiftR,bitwShiftL,bitwOr,bitwNot,bitwAnd,%
  < bindtextdomain,bindingIsLocked,bindingIsActive,baseenv,attributes<-,%
  < attr<-,attr.all.equal,attachNamespace,assign,asS4,%
  < asS3,asNamespace,as.vector.factor,as.vector,as.table.default,%
  < as.table,as.symbol,as.single.default,as.single,as.raw,%
  ---
  > summary.srcfile,summary.matrix,summary.factor,summary.default,summary.data.frame,%
  > summary.connection,summary.POSIXlt,summary.POSIXct,summary.Date,substring<-,%
  > substr<-,subset.matrix,subset.default,subset.data.frame,strwrap,%
  > strtrim,strtoi,strptime,strftime,storage.mode<-,%
  > storage.mode,stopifnot,stdout,stdin,stderr,%
  > standardGeneric,srcref,srcfilecopy,srcfilealias,srcfile,%
  > sprintf,split<-.default,split<-.data.frame,split<-,split.default,%
  > split.data.frame,split.POSIXct,split.Date,sort.list,sort.int,%
  > sort.default,sort.POSIXlt,solve.qr,solve.default,socketSelect,%
  > socketConnection,slice.index,sink.number,simplify2array,simpleWarning,%
  > simpleMessage,simpleError,simpleCondition,signalCondition,showConnections,%
  > shell.exec,shell,shQuote,setTimeLimit,setSessionTimeLimit,%
  > setNamespaceInfo,setHook,set.seed,serialize,seq_len,%
  > seq_along,seq.int,seq.default,seq.POSIXt,seq.Date,%
  > seek.connection,seek,scale.default,saveRDS,save.image,%
  > sample.int,sQuote,rowsum.default,rowsum.data.frame,rownames<-,%
  > rowSums,rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,%
  > row.names.default,row.names.data.frame,row.names,round.POSIXt,round.Date,%
  > rev.default,retracemem,restartFormals,restartDescription,requireNamespace,%
  > replicate,rep_len,rep.numeric_version,rep.int,rep.factor,%
  > rep.POSIXlt,rep.POSIXct,rep.Date,removeTaskCallback,regmatches<-,%
  > regmatches,registerS3methods,registerS3method,regexec,reg.finalizer,%
  > readRenviron,readRDS,readLines,readChar,readBin,%
  > read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
  > rawShift,rawConnectionValue,rawConnection,raw,rapply,%
  > range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
  > qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
  > qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
  > pushBack,psigamma,provideDimnames,prop.table,proc.time,%
  > print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
  > print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
  > print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
  > print.libraryIQR,print.hexmode,print.function,print.factor,print.difftime,%
  > print.default,print.data.frame,print.connection,print.condition,print.by,%
  > print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,%
  > print.DLLInfoList,print.DLLInfo,print.AsIs,prettyNum,pretty.default,%
  > pos.to.env,pmin.int,pmax.int,pipe,pi,%
  > path.package,path.expand,paste0,parseNamespaceFile,parent.frame,%
  > parent.env<-,parent.env,package_version,packageStartupMessage,packageHasNamespace,%
  > packageEvent,packBits,open.srcfilecopy,open.srcfilealias,open.srcfile,%
  > open.connection,open,on.exit,oldClass<-,oldClass,%
  > nzchar,numeric_version,normalizePath,norm,ngettext,%
  > new.env,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,namespaceImport,%
  > namespaceExport,names<-.POSIXlt,names<-,names.POSIXlt,mostattributes<-,%
  > months.POSIXt,months.Date,months,month.name,month.abb,%
  > mode<-,mget,message,merge.default,merge.data.frame,%
  > memory.profile,memDecompress,memCompress,mem.limits,mean.difftime,%
  > mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,mean.Date,%
  > max.col,match.fun,match.call,match.arg,mat.or.vec,%
  > margin.table,mapply,manglePackageName,makeActiveBinding,make.unique,%
  > make.names,lower.tri,logb,lockEnvironment,lockBinding,%
  > loadingNamespaceInfo,loadedNamespaces,loadNamespace,list2env,list.files,%
  > list.dirs,library.dynam.unload,library.dynam,lfactorial,levels<-.factor,%
  > levels<-,levels.default,letters,length<-.factor,length<-,%
  > length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,lazyLoad,labels.default,%
  > l10n_info,kappa.qr,kappa.lm,kappa.default,julian.POSIXt,%
  > julian.Date,julian,isdebugged,isatty,isTRUE,%
  > isSymmetric.matrix,isSymmetric,isSeekable,isS4,isRestart,%
  > isOpen,isNamespace,isIncomplete,isBaseNamespace,is.vector,%
  > is.unsorted,is.table,is.symbol,is.single,is.recursive,%
  > is.real,is.raw,is.qr,is.primitive,is.pairlist,%
  > is.package_version,is.ordered,is.object,is.numeric_version,is.numeric.difftime,%
  > is.numeric.POSIXt,is.numeric.Date,is.numeric,is.null,is.nan,%
  > is.name,is.na<-.factor,is.na<-.default,is.na<-,is.na.numeric_version,%
  > is.na.data.frame,is.na.POSIXlt,is.na,is.matrix,is.logical,%
  > is.loaded,is.list,is.language,is.integer,is.infinite,%
  > is.function,is.finite,is.factor,is.expression,is.environment,%
  > is.element,is.double,is.data.frame,is.complex,is.character,%
  > is.call,is.atomic,is.array,is.R,invokeRestartInteractively,%
  > invokeRestart,inverse.rle,intToUtf8,intToBits,importIntoEnv,%
  > identity,identical,icuSetCollate,iconvlist,iconv,%
  > gzfile,gzcon,grepl,grepRaw,gregexpr,%
  > gettextf,gettext,getTaskCallbackNames,getSrcLines,getRversion,%
  > getNativeSymbolInfo,getNamespaceVersion,getNamespaceUsers,getNamespaceName,getNamespaceInfo,%
  > getNamespaceImports,getNamespaceExports,getNamespace,getLoadedDLLs,getHook,%
  > getExportedValue,getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,%
  > getConnection,getCallingDLLe,getCallingDLL,getAllConnections,gctorture2,%
  > gc.time,formatDL,format.summaryDefault,format.pval,format.packageInfo,%
  > format.octmode,format.numeric_version,format.libraryIQR,format.info,format.hexmode,%
  > format.factor,format.difftime,format.default,format.data.frame,format.POSIXlt,%
  > format.POSIXct,format.Date,format.AsIs,formals<-,force,%
  > flush.connection,flush,findRestart,findPackageEnv,findInterval,%
  > find.package,file.symlink,file.show,file.rename,file.remove,%
  > file.path,file.link,file.info,file.exists,file.create,%
  > file.copy,file.choose,file.append,file.access,fifo,%
  > factorial,expm1,expand.grid,eval.parent,environmentName,%
  > environmentIsLocked,environment<-,env.profile,enquote,encodeString,%
  > enc2utf8,enc2native,emptyenv,eapply,dyn.unload,%
  > dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,duplicated.data.frame,%
  > duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,droplevels,%
  > do.call,dir.create,dimnames<-.data.frame,dimnames<-,dimnames.data.frame,%
  > dim<-,dim.data.frame,difftime,diff.default,diff.POSIXt,%
  > diff.Date,diag<-,determinant.matrix,determinant,det,%
  > delayedAssign,default.stringsAsFactors,debugonce,data.matrix,data.frame,%
  > data.class,dQuote,cut.default,cut.POSIXt,cut.Date,%
  > contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,conditionCall,%
  > computeRestarts,comment<-,colnames<-,colSums,colMeans,%
  > closeAllConnections,close.srcfilealias,close.srcfile,close.connection,clearPushBack,%
  > class<-,chol.default,check_tzones,chartr,charToRaw,%
  > char.expand,cbind.data.frame,casefold,capabilities,callCC,%
  > c.numeric_version,c.noquote,c.POSIXlt,c.POSIXct,c.Date,%
  > bzfile,by.default,by.data.frame,browserText,browserSetDebug,%
  > browserCondition,bquote,body<-,bitwXor,bitwShiftR,%
  > bitwShiftL,bitwOr,bitwNot,bitwAnd,bindtextdomain,%
  > bindingIsLocked,bindingIsActive,baseenv,attributes<-,attr<-,%
  > attr.all.equal,attachNamespace,assign,asS4,asS3,%
  > asNamespace,as.vector.factor,as.vector,as.table.default,as.table,%
  > as.symbol,as.single.default,as.single,as.real,as.raw,%
  818,827c824,834
  < Sys.setFileTime,Sys.readlink,Sys.localeconv,Sys.info,Sys.glob,%
  < Sys.getpid,Sys.getlocale,Sys.getenv,Sys.chmod,Sys.Date,%
  < Summary.ordered,Summary.numeric_version,Summary.factor,Summary.difftime,Summary.data.frame,%
  < Summary.POSIXlt,Summary.POSIXct,Summary.Date,Reduce,R_system_version,%
  < RNGversion,R.version.string,R.version,R.home,R.Version,%
  < Position,Ops.ordered,Ops.numeric_version,Ops.factor,Ops.difftime,%
  < Ops.data.frame,Ops.POSIXt,Ops.Date,Negate,Math.factor,%
  < Math.difftime,Math.data.frame,Math.POSIXt,Math.Date,Map,%
  < La.svd,LETTERS,ISOdatetime,ISOdate,Find,%
  < Filter,F,Encoding<-,Encoding,Cstack_info%
  ---
  > Sys.setFileTime,Sys.readlink,Sys.localeconv,Sys.junction,Sys.info,%
  > Sys.glob,Sys.getpid,Sys.getlocale,Sys.getenv,Sys.chmod,%
  > Sys.Date,Summary.ordered,Summary.numeric_version,Summary.factor,Summary.difftime,%
  > Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,Reduce,%
  > R_system_version,RNGversion,R.version.string,R.version,R.home,%
  > R.Version,Position,Ops.ordered,Ops.numeric_version,Ops.factor,%
  > Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,Negate,%
  > Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,Math.Date,%
  > Map,La.svd,LETTERS,ISOdatetime,ISOdate,%
  > Find,Filter,F,Encoding<-,Encoding,%
  > Cstack_info%
  1389,1404c1396,1411
  < morekeywords={[12]veteran,uspop2,untangle.specials,tt,tobin,%
  < tcut,survregDtest,survreg.fit,survreg.distributions,survreg.control,%
  < survreg,survobrien,survfitcoxph.fit,survfit,survexp.usr,%
  < survexp.us,survexp.mn,survexp,survdiff,survSplit,%
  < survConcordance,strata,stanford2,ridge,rats2,%
  < rats,ratetableDate,ratetable,qsurvreg,pyears,%
  < psurvreg,pspline,pbcseq,pbc,ovarian,%
  < nwtco,mgus2,mgus1,mgus,match.ratetable,%
  < lung,logan,leukemia,labels.survreg,kidney,%
  < jasa1,jasa,is.ratetable,is.na.ratetable,is.na.coxph.penalty,%
  < is.na.Surv,is.Surv,heart,frailty.t,frailty.gaussian,%
  < frailty.gamma,frailty,format.Surv,dsurvreg,coxph.fit,%
  < coxph.detail,coxph.control,coxph,cox.zph,colon,%
  < cluster,clogit,cgd,cch,cancer,%
  < bladder2,bladder1,bladder,basehaz,attrassign,%
  < aml,aareg,Surv%
  ---
  > morekeywords={[12]veteran,untangle.specials,tt,tobin,tcut,%
  > survregDtest,survreg.fit,survreg.distributions,survreg.control,survreg,%
  > survobrien,survfitcoxph.fit,survfit,survexp.usr,survexp.us,%
  > survexp.mn,survexp,survdiff,survSplit,survConcordance,%
  > strata,stanford2,ridge,rats2,rats,%
  > ratetableDate,ratetable,qsurvreg,pyears,psurvreg,%
  > pspline,pbcseq,pbc,ovarian,nwtco,%
  > mgus2,mgus1,mgus,match.ratetable,lung,%
  > logan,leukemia,labels.survreg,kidney,jasa1,%
  > jasa,is.ratetable,is.na.ratetable,is.na.coxph.penalty,is.na.Surv,%
  > is.Surv,heart,frailty.t,frailty.gaussian,frailty.gamma,%
  > frailty,format.Surv,dsurvreg,coxph.fit,coxph.detail,%
  > coxph.control,coxph,cox.zph,colon,cluster,%
  > clogit,cgd,cch,cancer,bladder2,%
  > bladder1,bladder,basehaz,attrassign,aml,%
  > aareg,Surv%
  OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... [16s/28s] OK
• checking PDF version of manual ... OK