• using R version 2.15.0 Patched (2012-05-26 r59446)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘RobLoxBioC/DESCRIPTION’ ... OK
• this is package ‘RobLoxBioC’ version ‘0.8.2’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘RobLoxBioC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking examples ... [27s/30s] OK
• checking differences from ‘RobLoxBioC-Ex.Rout’ to ‘RobLoxBioC-Ex.Rout.save’ ...
  3c3
  < Attaching package: 'BiocGenerics'
  ---
  > Welcome to Bioconductor
  5c5,7
  < The following object(s) are masked from 'package:stats':
  ---
  > Vignettes contain introductory material. To view, type
  > 'browseVignettes()'. To cite Bioconductor, see
  > 'citation("Biobase")' and for packages 'citation("pkgname")'.
  7d8
  < xtabs
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  < The following object(s) are masked from 'package:base':
  ---
  > Attaching package: 'reshape'
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  < Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
  < colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
  < order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
  < rownames, sapply, setdiff, table, tapply, union, unique
  ---
  > The following object(s) are masked from 'package:plyr':
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  < Welcome to Bioconductor
  ---
  > rename, round_any
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  < Vignettes contain introductory material; view with
  < 'browseVignettes()'. To cite Bioconductor, see
  < 'citation("Biobase")', and for packages 'citation("pkgname")'.
  <
  < Welcome to beadarray version 2.6.0
  ---
  > Welcome to beadarray version 2.4.1
  24c18,25
  < :startupmsg> Utilities for start-up messages (version 0.7.2)
  ---
  >
  > Attaching package: 'beadarray'
  >
  > The following object(s) are masked from 'package:plyr':
  >
  > summarize
  >
  > :startupmsg> Utilities for start-up messages (version 0.7.3)
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  < :SweaveListingUtils> 0.5.5)
  ---
  > :SweaveListingUtils> 0.5.4)
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  < :distr> 2.3.3)
  ---
  > :distr> 2.3.4)
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  < :distrEx> Extensions of package distr (version 2.3.1)
  ---
  > :distrEx> Extensions of package distr (version 2.3.2)
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  < :distrMod> (version 2.3.1)
  ---
  > :distrMod> (version 2.3.3)
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  < 8.316 0.205 9.456
  ---
  > 5.597 0.044 5.660
  362c363
  < > concentrations <- as.numeric(colnames(SpikeIn))
  ---
  > > concentrations <- as.numeric(sampleNames(SpikeIn))
  OK
• checking PDF version of manual ... OK