Check results for 'PBSmodelling'

using R version 2.15.0 Patched (2012-05-26 r59446)
using platform: i386-pc-solaris2.10 (32-bit)
using session charset: UTF-8
checking for file ‘PBSmodelling/DESCRIPTION’ ... OK
this is package ‘PBSmodelling’ version ‘2.63.229’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for .dll and .exe files ... OK
checking whether package ‘PBSmodelling’ can be installed ... OK
checking installed package size ... NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 1.7Mb
examples 1.8Mb
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File ‘PBSmodelling/R/zzz.r’:
.onLoad calls:
cat("\nPBS Modelling", pkg_info$Version, "-- Copyright (C) 2005-2010 Fisheries and Oceans Canada\n\nA complete user guide 'PBSmodelling-UG.pdf' is located at \n", userguide_path, "\n\nPackaged on", pkg_date, "\nPacific Biological Station, Nanaimo\n\n")
cat("-------------------------------------------------------------\n")
cat("ERROR: PBS Modelling requires the tcl package \"BWidget\"\nand cannot proceed until it is installed.\n")
cat("Ubuntu (apt) users can install via the command:\n\tsudo apt-get install bwidget\n")
cat("Bwidget source can be downloaded from http://sourceforge.net/projects/tcllib/files/\n\n")
cat("ERROR: PBS Modelling requires the tcl package \"Tktable\"\nand cannot proceed until it is installed.\n")
cat("Ubuntu (apt) users can install via the command:\n\tsudo apt-get install libtktable2.9\n")
cat("Mac (port) users can install via the command:\n\tsudo port install tktable (assuming mac ports is installed)\n")
cat("tktable can also be donwloaded from http://sourceforge.net/projects/tktable/files/\n\n")
cat("-------------------------------------------------------------\n")

Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.

.check.object.exists: warning in exists(widget$name, env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
.createWidget.image: warning in get(widget$varname, env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
.createWidget.object: warning in get(widget$name, env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
.dClose: warning in ls(pos = 1, all = TRUE): partial argument match of
'all' to 'all.names'
.extractData: warning in exists(command, mode = "function", env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
.getValueForWidgetSetup: warning in exists(varname, env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
.getValueForWidgetSetup: warning in get(varname, env =
.PBSmod[[winName]]$env): partial argument match of 'env' to 'envir'
getWinVal: warning in assign(key, vars[[key]], env = .GlobalEnv):
partial argument match of 'env' to 'envir'
initHistory: warning in exists("PBS.history", env = .GlobalEnv):
partial argument match of 'env' to 'envir'
initHistory: warning in get("PBS.history", env = .GlobalEnv): partial
argument match of 'env' to 'envir'
initHistory: warning in assign("PBS.history", list(), env =
.GlobalEnv): partial argument match of 'env' to 'envir'
initHistory: warning in assign("PBS.history", PBS.history, env =
.GlobalEnv): partial argument match of 'env' to 'envir'
plotACF: warning in axis(1, at = 1:30, tcl = 0.25, label = FALSE):
partial argument match of 'label' to 'labels'
runDemos: warning in ls(pos = 1, all = TRUE): partial argument match of
'all' to 'all.names'
runExample: warning in ls(pos = 1, all = TRUE): partial argument match
of 'all' to 'all.names'
runExamples: warning in ls(pos = 1, all = TRUE): partial argument match
of 'all' to 'all.names'
showVignettes: warning in ls(pos = 1, all = TRUE): partial argument
match of 'all' to 'all.names'
unpackList: warning in assign(namx[i], x[[i]], env = .GlobalEnv):
partial argument match of 'env' to 'envir'
.createWidget.slideplus : saveSlideBounds: no visible binding for
global variable ‘minVal’
.createWidget.slideplus : saveSlideBounds: no visible binding for
global variable ‘curVal’
.createWidget.slideplus : saveSlideBounds: no visible binding for
global variable ‘maxVal’
.dClose: no visible binding for global variable ‘.dwd’
.dClose: no visible binding for global variable ‘.dls’
.getPrefix: no visible binding for global variable ‘prefix’
.loadCRunComparison: no visible binding for global variable ‘runs’
.sortHelperActive: no visible binding for global variable ‘PBS.history’
.sortHelperActive: no visible binding for '<<-' assignment to
‘tmp.before’
.sortWidget : .done_sorting: no visible binding for global variable
‘PBS.history’
.sortWidget : .done_sorting: no visible binding for '<<-' assignment to
‘PBS.history’
.updateHistory: no visible binding for global variable ‘PBS.history’
.updateHistoryButtons: no visible binding for global variable
‘PBS.history’
.viewPkgDemo: no visible binding for global variable ‘OK’
addHistory: no visible binding for global variable ‘PBS.history’
addHistory: no visible binding for '<<-' assignment to ‘PBS.history’
backHistory: no visible binding for global variable ‘PBS.history’
backHistory: no visible binding for '<<-' assignment to ‘PBS.history’
calcMin : Sfun: no visible binding for '<<-' assignment to ‘PBSmin’
calcMin : Sfun: no visible binding for global variable ‘PBSmin’
calcMin: no visible binding for '<<-' assignment to ‘PBSmin’
calcMin: no visible binding for global variable ‘PBSmin’
clearHistory: no visible binding for global variable ‘PBS.history’
clearHistory: no visible binding for '<<-' assignment to ‘PBS.history’
createWin: no visible binding for global variable ‘PBS.history’
createWin: no visible binding for '<<-' assignment to ‘PBS.history’
createWin : .createMetaWidget.menu: no visible binding for global
variable ‘command’
exportHistory: no visible binding for global variable ‘PBS.history’
firstHistory: no visible binding for global variable ‘PBS.history’
forwHistory: no visible binding for global variable ‘PBS.history’
forwHistory: no visible binding for '<<-' assignment to ‘PBS.history’
getChoice: no visible binding for global variable ‘blist’
importHistory: no visible binding for global variable ‘PBS.history’
importHistory: no visible binding for '<<-' assignment to ‘PBS.history’
jumpHistory: no visible binding for global variable ‘PBS.history’
jumpHistory: no visible binding for '<<-' assignment to ‘PBS.history’
lastHistory: no visible binding for global variable ‘PBS.history’
rmHistory: no visible binding for global variable ‘PBS.history’
rmHistory: no visible binding for '<<-' assignment to ‘PBS.history’
runDemos: no visible binding for global variable ‘OK’
runExample : .runExHelperQuit: no visible binding for global variable
‘.cwd’
runExample : .runExHelperQuit: no visible binding for global variable
‘.cls’
runExamples : .runExHelperQuit: no visible binding for global variable
‘.cwd’
runExamples : .runExHelperQuit: no visible binding for global variable
‘.cls’
showHelp: no visible binding for global variable ‘remote’
sortHistory: no visible binding for global variable ‘PBS.history’
testWidgets : .testWidHelper: no visible binding for global variable
‘wN’
viewCode: no visible binding for global variable ‘remote’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... [3s/10s] OK
checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/home/ripley/R/packages/tests32/PBSmodelling.Rcheck/00check.log’
for details.