• using R version 3.3.1 Patched (2016-09-22 r71335)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘NeatMap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NeatMap’ version ‘0.3.6.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘NeatMap’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  data.reduction: no visible global function definition for ‘prcomp’
  data.reduction: no visible global function definition for ‘hclust’
  data.reduction: no visible global function definition for ‘as.dist’
  data.reduction: no visible global function definition for ‘cor’
  data.reduction: no visible global function definition for ‘dist’
  heatmap1: no visible global function definition for ‘sd’
  lineplot: no visible global function definition for ‘sd’
  normalize: no visible global function definition for ‘sd’
  profileplot3d : ColorFunction: no visible global function definition
    for ‘rgb’
  profileplot3d : ColorFunction: no visible global function definition
    for ‘colorRamp’
  profileplot3d: no visible global function definition for ‘sd’
  profileplot3d: no visible global function definition for ‘gray’
  Undefined global functions or variables:
    as.dist colorRamp cor dist gray hclust prcomp rgb sd
  Consider adding
    importFrom("grDevices", "colorRamp", "gray", "rgb")
    importFrom("stats", "as.dist", "cor", "dist", "hclust", "prcomp", "sd")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking compiled code ... NOTE
  File ‘NeatMap/libs/NeatMap.so’:
    Found ‘rand’, possibly from ‘rand’ (C)
      Object: ‘nMDS_R.o’
    Found ‘srand’, possibly from ‘srand’ (C)
      Object: ‘nMDS_R.o’
  
  Compiled code should not call entry points which might terminate R nor
  write to stdout/stderr instead of to the console, nor the system RNG.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... [12s/14s] OK
• checking PDF version of manual ... OK
• DONE

Status: 2 NOTEs