• using R version 3.0.1 Patched (2013-05-22 r62772)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘MetaQC/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MetaQC’ version ‘0.1.13’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MetaQC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  GMT2List: no visible binding for global variable ‘x’
  MetaQC : .FilterGenes: no visible binding for global variable ‘d’
  MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  ‘g’
  MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  ‘d’
  MetaQC : .CalcPval: no visible binding for global variable ‘i’
  MetaQC : .CalcPval: no visible binding for global variable ‘w’
  MetaQC : .CalcPval: no visible binding for global variable ‘j’
  MetaQC : .CalcPval: no visible binding for global variable ‘b’
  MetaQC : EQC: no visible binding for global variable ‘g’
  MetaQC : EQC: no visible binding for global variable ‘w’
  MetaQC : AQCg: no visible binding for global variable ‘i’
  MetaQC : AQCp: no visible binding for global variable ‘i’
  MetaQC : CQCg: no visible binding for global variable ‘dat’
  MetaQC : CQCg: no visible binding for global variable ‘pv’
  MetaQC : CQCg: no visible binding for global variable ‘i’
  MetaQC : CQCp: no visible binding for global variable ‘dat’
  MetaQC : CQCp: no visible binding for global variable ‘pv’
  MetaQC : CQCp: no visible binding for global variable ‘ii’
  MetaQC : CQCp: no visible binding for global variable ‘jj’
  MetaQC : CQCp: no visible binding for global variable ‘i’
  MetaQC : IQC: no visible binding for global variable ‘i’
  MetaQC : .CalcDistOfStudies: no visible binding for global variable
  ‘ii’
  MetaQC : .CalcDistOfStudies: no visible binding for global variable
  ‘jj’
  MetaQC : .CalcScores: no visible binding for global variable ‘d’
  requireAll: no visible binding for global variable ‘biocLite’
  requireAll: no visible global function definition for ‘biocLite’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/MetaQC.Rcheck/00check.log’
  for details.