• using R version 3.0.1 Patched (2013-05-18 r62762)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘BayesQTLBIC/DESCRIPTION’ ... OK
• this is package ‘BayesQTLBIC’ version ‘1.0-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BayesQTLBIC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  bicreg.models: warning in lm(y ~ 1, weight = wt): partial argument
  match of 'weight' to 'weights'
  bicreg.models: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
  FALSE): partial argument match of 'int' to 'intercept'
  bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
  bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
  bicreg.qtl: warning in lm(y ~ 1, w = wt): partial argument match of 'w'
  to 'weights'
  bicreg.qtl: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
  argument match of 'w' to 'weights'
  bicreg.qtl: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
  FALSE): partial argument match of 'int' to 'intercept'
  bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
  bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
  bicreg2: warning in lm(y ~ 1, w = wt): partial argument match of 'w' to
  'weights'
  bicreg2: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
  argument match of 'w' to 'weights'
  bicreg2: warning in lsfit(rep(1, length(y)), y, wt = wt, int = FALSE):
  partial argument match of 'int' to 'intercept'
  bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
  bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [7s/10s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/BayesQTLBIC.Rcheck/00check.log’
  for details.