• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘skills/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘skills’ version ‘1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘skills’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  plot.KS: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), name = "vp0"): partial argument match of 'w' to
  'width'
  plot.KS: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), name = "vp0"): partial argument match of 'h' to
  'height'
  plot.KS: warning in viewport(x = 0.5, y = 0.5, w = 0.98 - max(W)/2/(1 +
  max(W)), h = 0.98 - 0.3/ym/2, just = "centre", name = "vp1"): partial
  argument match of 'w' to 'width'
  plot.KS: warning in viewport(x = 0.5, y = 0.5, w = 0.98 - max(W)/2/(1 +
  max(W)), h = 0.98 - 0.3/ym/2, just = "centre", name = "vp1"): partial
  argument match of 'h' to 'height'
  plothasse: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), name = "vp0"): partial argument match of 'w' to
  'width'
  plothasse: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), name = "vp0"): partial argument match of 'h' to
  'height'
  plothasse: warning in viewport(x = 0.5, y = 0.5, w = 0.98 - max(W)/2/(1
  + max(W)), h = 0.98 - 0.3/ym/2, just = "centre", name = "vp1"):
  partial argument match of 'w' to 'width'
  plothasse: warning in viewport(x = 0.5, y = 0.5, w = 0.98 - max(W)/2/(1
  + max(W)), h = 0.98 - 0.3/ym/2, just = "centre", name = "vp1"):
  partial argument match of 'h' to 'height'
• checking Rd files ... NOTE
  prepare_Rd: JoinIrrEl.Rd:37-39: Dropping empty section \note
  prepare_Rd: KSatoms.Rd:32-34: Dropping empty section \note
  prepare_Rd: KSatoms.Rd:38-40: Dropping empty section \seealso
  prepare_Rd: KSbase.Rd:19-21: Dropping empty section \details
  prepare_Rd: KSbase.Rd:32-34: Dropping empty section \note
  prepare_Rd: KSdomain.Rd:19-21: Dropping empty section \details
  prepare_Rd: KSdomain.Rd:32-34: Dropping empty section \note
  prepare_Rd: KSdomain.Rd:38-40: Dropping empty section \seealso
  prepare_Rd: KSnotions.Rd:19-21: Dropping empty section \details
  prepare_Rd: KSnotions.Rd:32-34: Dropping empty section \note
  prepare_Rd: KStrace.Rd:39-41: Dropping empty section \note
  prepare_Rd: KStrace.Rd:45-47: Dropping empty section \seealso
  prepare_Rd: MeetIrrEl.Rd:37-39: Dropping empty section \note
  prepare_Rd: SkillAss.Rd:60-62: Dropping empty section \note
  prepare_Rd: as.KS.Rd:33-35: Dropping empty section \details
  prepare_Rd: as.KS.Rd:46-48: Dropping empty section \note
  prepare_Rd: as.KS.Rd:39-41: Dropping empty section \references
  prepare_Rd: as.KS.Rd:52-54: Dropping empty section \seealso
  prepare_Rd: as.gset.data.frame.Rd:39-41: Dropping empty section \note
  prepare_Rd: as.gset.data.frame.Rd:32-34: Dropping empty section \references
  prepare_Rd: as.relation.KS.Rd:48-50: Dropping empty section \note
  prepare_Rd: cind.Rd:27-29: Dropping empty section \details
  prepare_Rd: cind.Rd:41-43: Dropping empty section \note
  prepare_Rd: convert.Rd:47-49: Dropping empty section \note
  prepare_Rd: convert.Rd:40-42: Dropping empty section \references
  prepare_Rd: discred.Rd:36-38: Dropping empty section \note
  prepare_Rd: dualKS.Rd:35-37: Dropping empty section \note
  prepare_Rd: dualKS.Rd:41-43: Dropping empty section \seealso
  prepare_Rd: hammingDist.Rd:27-29: Dropping empty section \details
  prepare_Rd: hammingDist.Rd:40-42: Dropping empty section \note
  prepare_Rd: hammingDist.Rd:33-35: Dropping empty section \references
  prepare_Rd: hammingDist.Rd:46-48: Dropping empty section \seealso
  prepare_Rd: incomparable.Rd:34-36: Dropping empty section \note
  prepare_Rd: incomparable.Rd:27-29: Dropping empty section \references
  prepare_Rd: incomparable.Rd:40-42: Dropping empty section \seealso
  prepare_Rd: is.CSpace.Rd:40-42: Dropping empty section \note
  prepare_Rd: is.KS.Rd:42-44: Dropping empty section \note
  prepare_Rd: is.KS.Rd:48-50: Dropping empty section \seealso
  prepare_Rd: is.KSpace.Rd:40-42: Dropping empty section \note
  prepare_Rd: is.quordSpace.Rd:40-42: Dropping empty section \note
  prepare_Rd: item_cind.Rd:50-52: Dropping empty section \note
  prepare_Rd: lb_eKS.Rd:49-51: Dropping empty section \note
  prepare_Rd: lowerDist.Rd:31-33: Dropping empty section \details
  prepare_Rd: lowerDist.Rd:46-48: Dropping empty section \note
  prepare_Rd: lowerRep.Rd:48-50: Dropping empty section \note
  prepare_Rd: minSA.Rd:45-47: Dropping empty section \note
  prepare_Rd: minSA.Rd:51-53: Dropping empty section \seealso
  prepare_Rd: permtest.Rd:44-46: Dropping empty section \note
  prepare_Rd: permute.Rd:40-42: Dropping empty section \note
  prepare_Rd: permute.Rd:33-35: Dropping empty section \references
  prepare_Rd: permute.Rd:46-48: Dropping empty section \seealso
  prepare_Rd: plot.KS.Rd:70-72: Dropping empty section \value
  prepare_Rd: plot.KS.Rd:80-82: Dropping empty section \note
  prepare_Rd: plot.KS.Rd:73-75: Dropping empty section \references
  prepare_Rd: plot.KS.Rd:86-88: Dropping empty section \seealso
  prepare_Rd: plothasse.Rd:32-34: Dropping empty section \details
  prepare_Rd: plothasse.Rd:35-41: Dropping empty section \value
  prepare_Rd: plothasse.Rd:49-51: Dropping empty section \note
  prepare_Rd: plothasse.Rd:42-44: Dropping empty section \references
  prepare_Rd: probfun.Rd:50-52: Dropping empty section \note
  prepare_Rd: relabel.relation.Rd:40-42: Dropping empty section \note
  prepare_Rd: relabel.relation.Rd:33-35: Dropping empty section \references
  prepare_Rd: relabel.relation.Rd:46-48: Dropping empty section \seealso
  prepare_Rd: skill_cind.Rd:53-55: Dropping empty section \note
  prepare_Rd: skills-package.Rd:58-60: Dropping empty section \seealso
  prepare_Rd: summary.KS.Rd:25-27: Dropping empty section \details
  prepare_Rd: summary.KS.Rd:47-49: Dropping empty section \note
  prepare_Rd: summary.KS.Rd:53-55: Dropping empty section \seealso
  prepare_Rd: ub_eKS.Rd:49-51: Dropping empty section \note
  prepare_Rd: upperDist.Rd:31-33: Dropping empty section \details
  prepare_Rd: upperDist.Rd:46-48: Dropping empty section \note
  prepare_Rd: upperRep.Rd:48-50: Dropping empty section \note
  prepare_Rd: w_cind.Rd:27-29: Dropping empty section \details
  prepare_Rd: w_cind.Rd:41-43: Dropping empty section \note
  prepare_Rd: acm.rd:48-50: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'as.gset.data.frame':
  ‘as.gset.data.frame’
  
  S3 methods shown with full name in documentation object 'as.relation.KS':
  ‘as.relation.KS’
  
  S3 methods shown with full name in documentation object 'plot.KS':
  ‘plot.KS’
  
  S3 methods shown with full name in documentation object 'summary.KS':
  ‘summary.KS’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [362s/363s] OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/home/ripley/R/packages/tests32/skills.Rcheck/00check.log’
  for details.