- using R version 3.0.1 Patched (2013-05-18 r62762)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘rgenoud/DESCRIPTION’ ... OK
- this is package ‘rgenoud’ version ‘5.7-9’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘rgenoud’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
genoud : fnLexicalSort: no visible binding for global variable ‘indx’
genoud: multiple local function definitions for ‘fn1.bfgs’ with
different formal arguments
genoud: multiple local function definitions for ‘gr1’ with different
formal arguments
genoud: multiple local function definitions for ‘hess.fn’ with
different formal arguments
genoud_transform : fnLexicalSort: no visible binding for global
variable ‘indx’
genoud_transform: multiple local function definitions for ‘fn1.bfgs’
with different formal arguments
genoud_transform: multiple local function definitions for ‘gr1’ with
different formal arguments
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [189s/189s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [126s/126s] OK
Running ‘tests.R’ [124s/124s]
Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...17c17
< Mon May 20 21:38:15 2013
---
> Mon May 6 16:18:17 2013
175,176c175,176
< Mon May 20 21:38:18 2013
< Total run time : 0 hours 0 minutes and 3 seconds
---
> Mon May 6 16:18:17 2013
> Total run time : 0 hours 0 minutes and 0 seconds
204c204
< Mon May 20 21:38:18 2013
---
> Mon May 6 16:18:17 2013
362,363c362,363
< Mon May 20 21:38:28 2013
< Total run time : 0 hours 0 minutes and 10 seconds
---
> Mon May 6 16:18:19 2013
> Total run time : 0 hours 0 minutes and 2 seconds
398c398
< Mon May 20 21:38:28 2013
---
> Mon May 6 16:18:19 2013
498c498
< #unique......... 1821, #Total UniqueCount: 16190
---
> #unique......... 1822, #Total UniqueCount: 16191
508c508
< #unique......... 1838, #Total UniqueCount: 18028
---
> #unique......... 1839, #Total UniqueCount: 18030
518c518
< #unique......... 1735, #Total UniqueCount: 19763
---
> #unique......... 1734, #Total UniqueCount: 19764
528c528
< #unique......... 1688, #Total UniqueCount: 21451
---
> #unique......... 1689, #Total UniqueCount: 21453
538c538
< #unique......... 1719, #Total UniqueCount: 23170
---
> #unique......... 1715, #Total UniqueCount: 23168
556,557c556,557
< Mon May 20 21:38:49 2013
< Total run time : 0 hours 0 minutes and 21 seconds
---
> Mon May 6 16:18:21 2013
> Total run time : 0 hours 0 minutes and 2 seconds
606c606
< Mon May 20 21:38:49 2013
---
> Mon May 6 16:18:22 2013
651c651
< #unique......... 3416, #Total UniqueCount: 8416
---
> #unique......... 3423, #Total UniqueCount: 8423
665c665
< #unique......... 3642, #Total UniqueCount: 12058
---
> #unique......... 3642, #Total UniqueCount: 12065
679c679
< #unique......... 3483, #Total UniqueCount: 15541
---
> #unique......... 3528, #Total UniqueCount: 15593
693c693
< #unique......... 3666, #Total UniqueCount: 19207
---
> #unique......... 3666, #Total UniqueCount: 19259
707c707
< #unique......... 3335, #Total UniqueCount: 22542
---
> #unique......... 3335, #Total UniqueCount: 22594
721c721
< #unique......... 3027, #Total UniqueCount: 25569
---
> #unique......... 3028, #Total UniqueCount: 25622
735c735
< #unique......... 3074, #Total UniqueCount: 28643
---
> #unique......... 3074, #Total UniqueCount: 28696
749c749
< #unique......... 3043, #Total UniqueCount: 31686
---
> #unique......... 3043, #Total UniqueCount: 31739
763c763
< #unique......... 3047, #Total UniqueCount: 34733
---
> #unique......... 3047, #Total UniqueCount: 34786
777c777
< #unique......... 3089, #Total UniqueCount: 37822
---
> #unique......... 3089, #Total UniqueCount: 37875
791c791
< #unique......... 3020, #Total UniqueCount: 40842
---
> #unique......... 3020, #Total UniqueCount: 40895
805c805
< #unique......... 3030, #Total UniqueCount: 43872
---
> #unique......... 3029, #Total UniqueCount: 43924
828,829c828,829
< Mon May 20 21:40:16 2013
< Total run time : 0 hours 1 minutes and 27 seconds
---
> Mon May 6 16:18:30 2013
> Total run time : 0 hours 0 minutes and 8 seconds
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [25s/25s] OK
- checking re-building of vignette PDFs ... [26s/26s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/ripley/R/packages/tests32/rgenoud.Rcheck/00check.log’
for details.