• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘polysat/DESCRIPTION’ ... OK
• this is package ‘polysat’ version ‘1.2-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘polysat’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: Lynch.distance.Rd:53-55: Dropping empty section \note
  prepare_Rd: Samples.Rd:182-184: Dropping empty section \note
  prepare_Rd: Samples.Rd:176-178: Dropping empty section \references
  prepare_Rd: assignClones.Rd:68-70: Dropping empty section \note
  prepare_Rd: calcFst.Rd:58-60: Dropping empty section \note
  prepare_Rd: deleteSamples.Rd:47-49: Dropping empty section \references
  prepare_Rd: editGenotypes.Rd:55-57: Dropping empty section \note
  prepare_Rd: editGenotypes.Rd:49-51: Dropping empty section \references
  prepare_Rd: estimatePloidy.Rd:63-65: Dropping empty section \note
  prepare_Rd: estimatePloidy.Rd:57-59: Dropping empty section \references
  prepare_Rd: find.missing.gen.Rd:28-30: Dropping empty section \details
  prepare_Rd: find.missing.gen.Rd:43-45: Dropping empty section \note
  prepare_Rd: find.missing.gen.Rd:37-39: Dropping empty section \references
  prepare_Rd: freq.to.genpop.Rd:34-36: Dropping empty section \details
  prepare_Rd: freq.to.genpop.Rd:51-53: Dropping empty section \note
  prepare_Rd: genambig-class.Rd:164-166: Dropping empty section \note
  prepare_Rd: genambig-class.Rd:158-160: Dropping empty section \references
  prepare_Rd: genambig.to.genbinary.Rd:54-56: Dropping empty section \note
  prepare_Rd: genambig.to.genbinary.Rd:48-50: Dropping empty section \references
  prepare_Rd: genbinary-class.Rd:187-189: Dropping empty section \note
  prepare_Rd: genbinary-class.Rd:181-183: Dropping empty section \references
  prepare_Rd: gendata-class.Rd:199-201: Dropping empty section \note
  prepare_Rd: gendata-class.Rd:193-195: Dropping empty section \references
  prepare_Rd: genotypeDiversity.Rd:109-111: Dropping empty section \note
  prepare_Rd: genotypeProbs.Rd:105-107: Dropping empty section \note
  prepare_Rd: isMissing.Rd:52-54: Dropping empty section \note
  prepare_Rd: isMissing.Rd:46-48: Dropping empty section \references
  prepare_Rd: meandist.from.array.Rd:66-68: Dropping empty section \note
  prepare_Rd: meandist.from.array.Rd:60-62: Dropping empty section \references
  prepare_Rd: meandistance.matrix.Rd:96-97: Dropping empty section \references
  prepare_Rd: polysat-internal.Rd:50-51: Dropping empty section \details
  prepare_Rd: read.ATetra.Rd:40-42: Dropping empty section \note
  prepare_Rd: read.GenoDive.Rd:66-68: Dropping empty section \note
  prepare_Rd: read.POPDIST.Rd:66-68: Dropping empty section \note
  prepare_Rd: read.Structure.Rd:109-111: Dropping empty section \note
  prepare_Rd: read.Tetrasat.Rd:59-61: Dropping empty section \note
  prepare_Rd: simpleFreq.Rd:71-73: Dropping empty section \note
  prepare_Rd: simpleFreq.Rd:65-67: Dropping empty section \references
  prepare_Rd: viewGenotypes.Rd:49-51: Dropping empty section \note
  prepare_Rd: viewGenotypes.Rd:43-45: Dropping empty section \references
  prepare_Rd: write.ATetra.Rd:54-56: Dropping empty section \note
  prepare_Rd: write.GeneMapper.Rd:70-72: Dropping empty section \note
  prepare_Rd: write.GenoDive.Rd:72-74: Dropping empty section \note
  prepare_Rd: write.POPDIST.Rd:74-76: Dropping empty section \note
  prepare_Rd: write.SPAGeDi.Rd:95-97: Dropping empty section \note
  prepare_Rd: write.Tetrasat.Rd:73-75: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [125s/125s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [149s/149s] OK
• checking re-building of vignette PDFs ... [182s/182s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/polysat.Rcheck/00check.log’
  for details.