• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘nlmeODE/DESCRIPTION’ ... OK
• this is package ‘nlmeODE’ version ‘1.0’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for .dll and .exe files ... OK
• checking whether package ‘nlmeODE’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘nlmeODE/R/zzz.R’:
  .First.lib calls:
  require(nlme)
  require(lattice)
  require(odesolve)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
  nlmeODE : <anonymous>: warning in
  lsoda(Info[[subj]][[as.character(i)]]$Init * BioComb, Time[subj ==
  Subject & Time <= Info[[subj]][[as.character(i + 1)]]$StartTime],
  pkmodel, tcrit = Info[[subj]][[as.character(i + 1)]]$StartTime, parms
  = eval(parse(text = paste("c(", sep = "", paste(lsodaparms, collapse
  = ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc, hmin = hmin,
  hmax = hmax): partial argument match of 'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in
  lsoda(Info[[subj]][[as.character(i)]]$Init * BioComb, Time[subj ==
  Subject & Time <= Info[[subj]][[as.character(i + 1)]]$StartTime &
  Type == 1], pkmodel, tcrit = Info[[subj]][[as.character(i +
  1)]]$StartTime, parms = eval(parse(text = paste("c(", sep = "",
  paste(lsodaparms, collapse = ","), ")"))), rtol = rtol, atol = atol,
  jac = JACfunc, hmin = hmin, hmax = hmax): partial argument match of
  'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(xhat[[i - 1]][dim(xhat[[i -
  1]])[1], -1] + Info[[subj]][[as.character(i)]]$Init * BioComb,
  Time[subj == Subject & Time >=
  Info[[subj]][[as.character(i)]]$StartTime & Time <=
  Info[[subj]][[as.character(i + 1)]]$StartTime], pkmodel, tcrit =
  Info[[subj]][[as.character(i + 1)]]$StartTime, parms =
  eval(parse(text = paste("c(", sep = "", paste(lsodaparms, collapse =
  ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc, hmin = hmin,
  hmax = hmax): partial argument match of 'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(xhat[[i - 1]][dim(xhat[[i -
  1]])[1], -1] + Info[[subj]][[as.character(i)]]$Init * BioComb,
  Time[subj == Subject & Time >=
  Info[[subj]][[as.character(i)]]$StartTime & Time <=
  Info[[subj]][[as.character(i + 1)]]$StartTime & Type == 1], pkmodel,
  tcrit = Info[[subj]][[as.character(i + 1)]]$StartTime, parms =
  eval(parse(text = paste("c(", sep = "", paste(lsodaparms, collapse =
  ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc, hmin = hmin,
  hmax = hmax): partial argument match of 'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(xhat[[i - 1]][dim(xhat[[i -
  1]])[1], -1] + Info[[subj]][[as.character(i)]]$Init * BioComb,
  Time[subj == Subject & Time >=
  Info[[subj]][[as.character(i)]]$StartTime], pkmodel, parms =
  eval(parse(text = paste("c(", sep = "", paste(lsodaparms, collapse =
  ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc, hmin = hmin,
  hmax = hmax): partial argument match of 'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(xhat[[i - 1]][dim(xhat[[i -
  1]])[1], -1] + Info[[subj]][[as.character(i)]]$Init * BioComb,
  Time[subj == Subject & Time >=
  Info[[subj]][[as.character(i)]]$StartTime & Type == 1], pkmodel,
  parms = eval(parse(text = paste("c(", sep = "", paste(lsodaparms,
  collapse = ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc,
  hmin = hmin, hmax = hmax): partial argument match of 'jac' to
  'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(Info[[subj]][["1"]]$Init *
  BioComb, Time[subj == Subject], pkmodel, parms = eval(parse(text =
  paste("c(", sep = "", paste(lsodaparms, collapse = ","), ")"))), rtol
  = rtol, atol = atol, jac = JACfunc, tcrit = tcrit, hmin = hmin, hmax
  = hmax): partial argument match of 'jac' to 'jacfunc'
  nlmeODE : <anonymous>: warning in lsoda(Info[[subj]][["1"]]$Init *
  BioComb, Time[subj == Subject & Type == 1], pkmodel, parms =
  eval(parse(text = paste("c(", sep = "", paste(lsodaparms, collapse =
  ","), ")"))), rtol = rtol, atol = atol, jac = JACfunc, tcrit = tcrit,
  hmin = hmin, hmax = hmax): partial argument match of 'jac' to
  'jacfunc'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [24s/24s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/ripley/R/packages/tests32/nlmeODE.Rcheck/00check.log’
  for details.