Check results for 'nlme'

using R version 3.0.0 Patched (2013-04-28 r62683)
using platform: sparc-sun-solaris2.10 (32-bit)
using session charset: UTF-8
checking for file ‘nlme/DESCRIPTION’ ... OK
this is package ‘nlme’ version ‘3.1-109’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for .dll and .exe files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘nlme’ can be installed ... [214s/215s] OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable compilation flags in Makevars ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... [448s/448s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [127s/127s] OK
Running ‘anova.gls.R’ [11s/11s]
Running ‘augPred_lab.R’
Running ‘augPredmissing.R’
Running ‘coef.R’
Running ‘contrMat.R’
Running ‘data.frame.R’
Running ‘deparse.R’
Running ‘getData.R’
Running ‘gls.R’
Running ‘lmList.R’
Running ‘lme.R’ [39s/39s]
Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK
Running ‘missing.R’
Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ...595c595
< 0.447744 0.994846 -0.016267 -0.028703 0.052086 0.411533 -0.793662 -1.757235
---
> 0.447744 0.994846 -0.016267 -0.028703 0.052087 0.411533 -0.793662 -1.757235
597c597
< -1.457725 1.072744 0.990716 -0.012267 -0.006703 -0.058914 0.341533 0.086338
---
> -1.457725 1.072744 0.990716 -0.012267 -0.006703 -0.058913 0.341533 0.086338
599c599
< -0.917235 -0.677725 3.997971 4.288544 5.054816 -0.015267 0.001297 0.118086
---
> -0.917235 -0.677725 3.997971 4.288544 5.054816 -0.015267 0.001297 0.118087
603c603
< -0.024703 0.122086 0.241533 1.046338 -1.037235 -1.047725 3.368344 -0.014267
---
> -0.024703 0.122087 0.241533 1.046338 -1.037235 -1.047725 3.368344 -0.014267
605c605
< 0.039297 -0.026914 -0.178467 0.146338 -1.447235 -1.527725 -0.352029 1.486844
---
> 0.039297 -0.026913 -0.178467 0.146338 -1.447235 -1.527725 -0.352029 1.486844
607c607
< 3.176316 -0.018267 -0.022703 0.041086 -0.258467 0.226338 -2.107235 -1.317725
---
> 3.176316 -0.018267 -0.022703 0.041087 -0.258467 0.226338 -2.107235 -1.317725
609c609
< 1.986044 0.968216 -0.017267 -0.024703 0.016086 -0.298467 -0.713662 -1.787235
---
> 1.986044 0.968216 -0.017267 -0.024703 0.016087 -0.298467 -0.713662 -1.787235
611c611
< -1.147725 -1.232029 2.320214 2.924016 0.010733 0.040297 -0.024914 -0.048467
---
> -1.147725 -1.232029 2.320214 2.924016 0.010733 0.040297 -0.024913 -0.048467
615c615
< 0.171086 0.071533 0.186338 0.352765 -0.887725 4.777971 1.117744 10.614016
---
> 0.171087 0.071533 0.186338 0.352765 -0.887725 4.777971 1.117744 10.614016
617c617
< 0.010733 0.081297 0.400086 0.731533 0.166338 -0.137235 1.532275 1.587971
---
> 0.010733 0.081297 0.400087 0.731533 0.166338 -0.137235 1.532275 1.587971
619c619
< 7.869344 4.734816 0.033733 0.059297 0.455086 0.121533 0.986338 3.662765
---
> 7.869344 4.734816 0.033733 0.059297 0.455087 0.121533 0.986338 3.662765
621c621
< -1.047725 1.427971 -0.936056 5.044016 0.018733 0.030297 0.206086 0.281533
---
> -1.047725 1.427971 -0.936056 5.044016 0.018733 0.030297 0.206087 0.281533
625c625
< 0.368086 0.421533 0.316338 0.572765 1.522275 3.847971 -1.472256 13.515716
---
> 0.368087 0.421533 0.316338 0.572765 1.522275 3.847971 -1.472256 13.515716
627c627
< 0.024733 0.068297 0.073086 -0.098467 -0.213662 -0.257235 -1.007725 0.457971
---
> 0.024733 0.068297 0.073087 -0.098467 -0.213662 -0.257235 -1.007725 0.457971
629c629
< 3.386044 5.816746 0.009733 0.057297 0.364086 0.571533 0.216338 -2.087235
---
> 3.386044 5.816746 0.009733 0.057297 0.364087 0.571533 0.216338 -2.087235
715,728c715,728
< [163] 4.14689 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689
< [172] 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485
< [181] 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745
< [190] 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374
< [199] 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374 0.24949
< [208] 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374 0.24949 0.53236
< [217] 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887
< [226] 2.89187 4.14689 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187
< [235] 4.14689 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689
< [244] 4.47485 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485
< [253] 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745
< [262] 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374
< [271] 0.24949 0.53236 1.06887 2.89187 4.14689 4.47485 0.05745 0.11374 0.24949
< [280] 0.53236 1.06887 2.89187 4.14689 4.47485 0.06440 0.15959 0.34691 0.72506
---
> [163] 4.14689 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689
> [172] 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486
> [181] 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745
> [190] 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374
> [199] 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374 0.24949
> [208] 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374 0.24949 0.53236
> [217] 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887
> [226] 2.89187 4.14689 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187
> [235] 4.14689 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689
> [244] 4.47486 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486
> [253] 0.05745 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745
> [262] 0.11374 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374
> [271] 0.24949 0.53236 1.06887 2.89187 4.14689 4.47486 0.05745 0.11374 0.24949
> [280] 0.53236 1.06887 2.89187 4.14689 4.47486 0.06440 0.15959 0.34691 0.72506
Running ‘nlme.R’
Comparing ‘nlme.Rout’ to ‘nlme.Rout.save’ ... OK
Running ‘predict.lme.R’
Running ‘update.R’
Running ‘updateLme.R’
Running ‘varIdent.R’
checking PDF version of manual ... OK