• using R version 2.15.0 Patched (2012-03-31 r58888)
  • using platform: sparc-sun-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘multcomp/DESCRIPTION’ ... OK
  • this is package ‘multcomp’ version ‘1.2-12’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for .dll and .exe files ... OK
  • checking whether package ‘multcomp’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking examples ... [132s/132s] OK
  • checking differences from ‘multcomp-Ex.Rout’ to ‘multcomp-Ex.Rout.save’ ...
    280a281,288
    >
    > Attaching package: 'Matrix'
    >
    > The following object(s) are masked from 'package:base':
    >
    > det
    >
    > Warning: replacing previous import 'diag' when loading 'Matrix'
    445c453
    < Quantile = 3.0633
    ---
    > Quantile = 3.0638
    451,460c459,468
    < B - A == 0 -2.1333 -4.7921 0.5254
    < C - A == 0 3.6000 0.9413 6.2587
    < D - A == 0 2.2000 -0.4587 4.8587
    < E - A == 0 -4.3333 -6.9921 -1.6746
    < C - B == 0 5.7333 3.0746 8.3921
    < D - B == 0 4.3333 1.6746 6.9921
    < E - B == 0 -2.2000 -4.8587 0.4587
    < D - C == 0 -1.4000 -4.0587 1.2587
    < E - C == 0 -7.9333 -10.5921 -5.2746
    < E - D == 0 -6.5333 -9.1921 -3.8746
    ---
    > B - A == 0 -2.1333 -4.7925 0.5259
    > C - A == 0 3.6000 0.9408 6.2592
    > D - A == 0 2.2000 -0.4592 4.8592
    > E - A == 0 -4.3333 -6.9925 -1.6741
    > C - B == 0 5.7333 3.0741 8.3925
    > D - B == 0 4.3333 1.6741 6.9925
    > E - B == 0 -2.2000 -4.8592 0.4592
    > D - C == 0 -1.4000 -4.0592 1.2592
    > E - C == 0 -7.9333 -10.5925 -5.2741
    > E - D == 0 -6.5333 -9.1925 -3.8741
    505c513
    < D - B == 0 4.3333 0.8679 4.993 0.000531 ***
    ---
    > D - B == 0 4.3333 0.8679 4.993 0.000398 ***
    526c534
    < C - A == 0 3.6000 0.8679 4.148 0.00271 **
    ---
    > C - A == 0 3.6000 0.8679 4.148 0.00275 **
    938,939c946,947
    < otrend >= 0 -3.4821 2.0867 -1.669 0.2185
    < atrend >= 0 -314.7324 408.9901 -0.770 0.6625
    ---
    > otrend >= 0 -3.4821 2.0867 -1.669 0.2182
    > atrend >= 0 -314.7324 408.9901 -0.770 0.6621
    1238a1247,1253
    > Attaching package: 'Matrix'
    >
    > The following object(s) are masked from 'package:base':
    >
    > det
    >
    >
    OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [56s/56s] OK
    Running ‘bugfix.R’ [11s/11s]
    Comparing ‘bugfix.Rout’ to ‘bugfix.Rout.save’ ...124,125c124,125
    < [1] 1.380883e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01
    < [6] 9.917862e-04 6.540452e-10 2.512705e-01 3.447725e-06 3.042641e-03
    ---
    > [1] 1.380883e-01 3.524764e-04 9.394029e-07 2.897682e-14 2.050268e-01
    > [6] 9.917862e-04 6.540450e-10 2.512705e-01 3.447725e-06 3.042641e-03
    163c163
    < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
    ---
    > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
    181c181
    < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
    ---
    > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
    202c202
    < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
    ---
    > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
    Running ‘regtest-Tukey.R’
    Comparing ‘regtest-Tukey.Rout’ to ‘regtest-Tukey.Rout.save’ ... OK
    Running ‘regtest-anova.R’
    Comparing ‘regtest-anova.Rout’ to ‘regtest-anova.Rout.save’ ... OK
    Running ‘regtest-interface.R’
    Comparing ‘regtest-interface.Rout’ to ‘regtest-interface.Rout.save’ ... OK
    Running ‘regtest-lme.R’ [30s/30s]
    Comparing ‘regtest-lme.Rout’ to ‘regtest-lme.Rout.save’ ...11a12,18
    > Attaching package: 'Matrix'
    >
    > The following object(s) are masked from 'package:base':
    >
    > det
    >
    >
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [296s/324s] OK
  • checking re-building of vignette PDFs ... [351s/380s] OK
  • checking PDF version of manual ... OK